PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020905.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 434aa    MW: 45594 Da    PI: 7.0504
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020905.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.53.2e-053243611254
                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Do020905.1 324 RKEKLGDRITALQQLVAPF-----GKTDTASVLHETIEYIKFL 361
                 677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.668312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.42E-5322365No hitNo description
SuperFamilySSF474598.51E-11322380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-8322379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MGDHAEMLHA APTVVYSGAG AAPHGGWWNA AAVPAATCST ELAGFGTWSS ALAASYDIAV  60
EGGKATKSAT TASSESPGNN SSVTFQEPTS VTDPVGIGAA VHQQPLAAGY TDWTHPYISS  120
GATLHGFLQD SHQDMSSRTE QSPMVASSLM NPSSNNLALQ GQDHHQLLSS FGSELLLSPT  180
SPYGFQSSSI LRSLMEPTAK PALPGFQQYD QYGQQMGQAS PAAAGRFAPG AIREQLQFTN  240
DAPFWNSSAA GFGVPAAAAP DQASVRSVVK QSPAPRAATL AIKTALEGVG ESSSIIIKKK  300
ANGEPAFKKP RLETPSPLPT FKVRKEKLGD RITALQQLVA PFGKTDTASV LHETIEYIKF  360
LHDQVGALSA PYLKNGHQVP HLKQSSSPEK SKDSSHGEIS LKGRGLCLVP ISSTFAVASE  420
VPVDFWTPFG PNFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020905.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822972.10.0transcription factor bHLH112-like
TrEMBLA0A1E5VU630.0A0A1E5VU63_9POAL; Transcription factor bHLH112
STRINGSi010139m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.33e-49bHLH family protein