PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020891.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 339aa    MW: 39552.2 Da    PI: 6.8337
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020891.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1782.5e-55151491129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++        ++e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++
  Do020891.1  15 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-NVIKDVDLYKIEPWDLQEkcrlgaPGEEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKPIY 112
                 69****************************.99**************953655542233667************************************* PP

         NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                 ++ +++lvg++ktLv+ykgrap+g+k+dW+mheyrle
  Do020891.1 113 ANkQRQLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 149
                 9856777****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-606169IPR003441NAC domain
PROSITE profilePS5100560.32315169IPR003441NAC domain
PfamPF023651.3E-2816148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGMSSTQAQQ TQQLVPPGFR FHPTDEELVD YYLRKKVASR RIDLNVIKDV DLYKIEPWDL  60
QEKCRLGAPG EEEQNEWYFF SHKDKKYPTG TRTNRATAAG FWKATGRDKP IYANKQRQLV  120
GMRKTLVYYK GRAPNGHKSD WIMHEYRLET NENGPPQEEG WVVCRVFKKR LPTTRRESDH  180
DAPCWYVDED GPFMHDLNSP MSRMPPHHSM SQLQEQHIQM LNNTYKRELK LQFQMPSHHV  240
LNTIPHELES QTFHSLLVSP DHQTNVHHAH QHVQLMEDAI DQVTDWRVLD KFVASQLSHD  300
ATKGVDYTDG DIIQVNEKQE APTDYASTST SSSQVDPWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-5211701169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020891.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750910.0KT075091.1 Panicum virgatum secondary wall NAC master switch (SWN7B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964278.10.0NAC domain-containing protein 105
SwissprotQ9FWX21e-107NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A1E5V0Y40.0A0A1E5V0Y4_9POAL; NAC domain-containing protein 7
STRINGPavir.Da02426.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121023039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-99NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]