PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do020867.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 27923.2 Da PI: 9.4978 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.3 | 4.8e-07 | 143 | 171 | 3 | 31 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 3 rahnerErrRRdriNsafeeLrellPkas 31 + h ++Er+RR+r+ + f L +++P ++ Do020867.1 143 QEHVIAERKRRERMQQQFVALATIVPDLT 171 5799**********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.16E-6 | 136 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-4 | 143 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-6 | 143 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDELNRWPSH PDPEDELPYM YRQQEEHAGM QQHFAERVPE QQQYYAPLPP MAPPPTPNPI 60 SPSHPLHQGS SFPGFGVPAL PSLLLGDMSA KSEPGQPSSS SSIFSFGRQP PSTLNFSGGD 120 WPNGIEAAQQ VPERRSRAHW NTQEHVIAER KRRERMQQQF VALATIVPDL TKPTAGRGHA 180 GSRTTTGVCD FLWRRGAAGL ELGRERVTAR YGRQRNHLRN PRSKSNPIGE GFSTTVELVA 240 NLTMALRGFS T |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 153 | ERKRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do020867.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798093.1 | 7e-79 | transcription factor bHLH18-like | ||||
TrEMBL | A0A1E5V3C8 | 0.0 | A0A1E5V3C8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J22937.1.p | 8e-69 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6401 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-08 | bHLH family protein |