PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020814.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SRS
Protein Properties Length: 327aa    MW: 33363.9 Da    PI: 8.9305
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020814.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702222.39.6e-691022523153
      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101
                  g++sCqdCGnqakkdCah+RCRtCCksrg+ C+thvkstWvpaakrrerqqqla ++++aaa++a a + r+ +++ +++ ++++ ++ss+++++ + 
  Do020814.1 102 GGGISCQDCGNQAKKDCAHQRCRTCCKSRGYACTTHVKSTWVPAAKRRERQQQLAVLAASAAATTAGAGPSRDPTKRPRARLSVATPTTSSGDQQMVTV 200
                 5789******************************************************999999988888888888899999***************** PP

      DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                 ++++P+evsseavfrcvr++ vd++e+e+aYqt+vsigGhvfkGiL+d G++
  Do020814.1 201 AERFPREVSSEAVFRCVRLGPVDQAEAEVAYQTTVSIGGHVFKGILHDVGPH 252
                 **************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.3E-64104252IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.1E-26106148IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.0E-23203251IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAGFPLGGGG HSHSHSRDAP APSVPPVHPS DAAAAASFLY ATRATGGGLQ LWQQHEQQQH  60
HPFYASNIIR FSDDPPGAAP SLTGAASSSS SRGTRGGGGS SGGGISCQDC GNQAKKDCAH  120
QRCRTCCKSR GYACTTHVKS TWVPAAKRRE RQQQLAVLAA SAAATTAGAG PSRDPTKRPR  180
ARLSVATPTT SSGDQQMVTV AERFPREVSS EAVFRCVRLG PVDQAEAEVA YQTTVSIGGH  240
VFKGILHDVG PHSLGTAGGA GGGAIEYHFR HAGDGSPPST VAAGEVGGGG VANVIVSSAV  300
VMDPYPTPGP YGAFPAGAAF FHGHPRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020814.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0334110.0BT033411.1 Zea mays full-length cDNA clone ZM_BFb0154O01 mRNA, complete cds.
GenBankBT0876180.0BT087618.1 Zea mays full-length cDNA clone ZM_BFb0133L22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803795.11e-153protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A1E5V1310.0A0A1E5V131_9POAL; Protein SHI RELATED SEQUENCE 1
STRINGGRMZM2G080295_P011e-144(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-47Lateral root primordium (LRP) protein-related