PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do020752.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GeBP

Protein Properties

Length: 593aa MW: 63897.3 Da PI: 9.1855

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do020752.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	35.9	2e-11	247	336	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++qrlw ++De+ +L +l + +++g+ ++ ++ ++ ++++ + + +++ eK+r LK +++k v++ ++ +ke++ ++f+ls+ +Wg Do020752.1 247 RAQRLWGKNDEMKILEALAKHVKSHGV--LPKTEFLIATIGDRLDrKDCTYKDIYEKVRMLKGRYEKAVST-----GIVPTKEDELQMFHLSEAVWG 336 57*****************999995..5667889***97257999**************99.....6778899999********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.4E-15	249	336	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MARKRRAPSP PPPPPPPQEE ESSEESGSGE EEETPPRLPP PRMPPPPAAA PDDSDSSEGS 60 DSDPDAFQLR QVRRSPTKLP PHRAPQPESD GEEEDESSES EPENPEPVVQ KAPAAAAAKS 120 KAEQERKRPA ADPAPSGKAK KAKAGAEKAA AAAPEASPPG KAKKGKAEPE KAAPALEATP 180 AAKAKKGKAE PEKAAPEATP ASKAKKGNAE PEKGAPEATP SVKGKKGGAK PEKPVAPDPL 240 PSGKPSRAQR LWGKNDEMKI LEALAKHVKS HGVLPKTEFL IATIGDRLDR KDCTYKDIYE 300 KVRMLKGRYE KAVSTGIVPT KEDELQMFHL SEAVWGDKPK EAIAAATSQN DGAVTKNKKG 360 QTNKERIDEN SKGGARKEAA TSTATQNGDY QKGSKKGQAT KEKTDRDVKS KLSKEATTAG 420 TLSKKRENHN EELDKDAKSG ALKEATTAGT LNVGDSVKSK RGKTDKGKMD IDTDSLTPKE 480 ATTSNQNVST LAKNKKEETH DEEIERDANV QGMRRGFDEL QNLYSNLSSY VEEIEVQHPC 540 GETLKRAFEF IGDEKAQSLE SKLKKQRVEE AKEQIRRADI KKDVLNVLIS LVD

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MARKRRAPSP PPPPPPPQEE ESSEESGSGE EEETPPRLPP PRMPPPPAAA PDDSDSSEGS  60
DSDPDAFQLR QVRRSPTKLP PHRAPQPESD GEEEDESSES EPENPEPVVQ KAPAAAAAKS  120
KAEQERKRPA ADPAPSGKAK KAKAGAEKAA AAAPEASPPG KAKKGKAEPE KAAPALEATP  180
AAKAKKGKAE PEKAAPEATP ASKAKKGNAE PEKGAPEATP SVKGKKGGAK PEKPVAPDPL  240
PSGKPSRAQR LWGKNDEMKI LEALAKHVKS HGVLPKTEFL IATIGDRLDR KDCTYKDIYE  300
KVRMLKGRYE KAVSTGIVPT KEDELQMFHL SEAVWGDKPK EAIAAATSQN DGAVTKNKKG  360
QTNKERIDEN SKGGARKEAA TSTATQNGDY QKGSKKGQAT KEKTDRDVKS KLSKEATTAG  420
TLSKKRENHN EELDKDAKSG ALKEATTAGT LNVGDSVKSK RGKTDKGKMD IDTDSLTPKE  480
ATTSNQNVST LAKNKKEETH DEEIERDANV QGMRRGFDEL QNLYSNLSSY VEEIEVQHPC  540
GETLKRAFEF IGDEKAQSLE SKLKKQRVEE AKEQIRRADI KKDVLNVLIS LVD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do020752.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824313.1	0.0	recombination repair protein 1-like
TrEMBL	A0A1E5VHW6	0.0	A0A1E5VHW6_9POAL; Uncharacterized protein
STRING	Pavir.Ab01142.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37