PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020719.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 582aa    MW: 65112.5 Da    PI: 7.4289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020719.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.6e-0955101455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++ e+ErrRR r+Ns +   r ++P+      +K+sK ++L  A + Ik+Lq
  Do020719.1  55 KNLEAERRRRGRLNSNILAXRAVVPNI-----TKMSKESTLSDAXDXIKKLQ 101
                 56799*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-1351113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.38351100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.02E-851105No hitNo description
Gene3DG3DSA:4.10.280.101.4E-1053112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-654101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-957106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF483716.1E-92240572IPR016024Armadillo-type fold
PfamPF032242.0E-52241453No hitNo description
Gene3DG3DSA:1.25.10.103.0E-64241461IPR011989Armadillo-like helical
PfamPF116981.2E-38459571IPR011987ATPase, V1 complex, subunit H, C-terminal
Gene3DG3DSA:1.25.40.1504.9E-39473572IPR011987ATPase, V1 complex, subunit H, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015991Biological ProcessATP hydrolysis coupled proton transport
GO:0000221Cellular Componentvacuolar proton-transporting V-type ATPase, V1 domain
GO:0000325Cellular Componentplant-type vacuole
GO:0005794Cellular ComponentGolgi apparatus
GO:0005886Cellular Componentplasma membrane
GO:0009507Cellular Componentchloroplast
GO:0016820Molecular Functionhydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MPRRQRTRSS EELKAEDFVD SVLNFGGAGG GEGEDEDEGE AAGXGQPXAT EYKSKNLEAE  60
RRRRGRLNSN ILAXRAVVPN ITKMSKESTL SDAXDXIKKL QNQVHELQRQ LADSPDEAWE  120
KQGSASCSES FAATENMPYQ GQVELVPLGP YKYHLKIFCK KAGIFTKVLE ALCSYNAQVT  180
SLSTITYYGY AESVFSIEVK GEQDVVMVEL RSLLSSIVEV VPGPVLGLPP RWIARSSPPS  240
RLLWKGNWFV QEKSCKILTD IISARPKLQN GMLPNGDSSN SKSKLTSTHD VFRGLVDWLC  300
SQIRNPTHPS CSIPTAIHCL STLLREPYVR TLFVQADGIK LLIPLITPAS TQQSIQLLYE  360
TCLCIWLLSF YDAAVDYLST TRVMPRLIEV VKGSTKEKVV RVVVMSFGNL LAKGAFAAQM  420
IDLGLPQIVQ NLKSQAWTDE DLLDALNQLE VGLKDNLKKL SSFDKYKQQV LLGHLDWSPM  480
HKDPSFWREN INNFEENDFQ ILRVLMTIID TSSDTTALAV ACYDLSQFLQ YHPSGRIVVA  540
DLKAKDRVMK LMNHENAEVR KNALLCVQRL FLGAKYASFL QA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ho8_A1e-18327571214475VACUOLAR ATP SYNTHASE SUBUNIT H
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSubunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020719.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396600.0BT039660.1 Zea mays full-length cDNA clone ZM_BFc0037H01 mRNA, complete cds.
GenBankBT0560500.0BT056050.1 Zea mays full-length cDNA clone ZM_BFc0160M07 mRNA, complete cds.
GenBankBT0677940.0BT067794.1 Zea mays full-length cDNA clone ZM_BFc0160M01 mRNA, complete cds.
GenBankEU9728130.0EU972813.1 Zea mays clone 388497 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460834.10.0probable V-type proton ATPase subunit H
SwissprotQ84ZC00.0VATH_ORYSJ; Probable V-type proton ATPase subunit H
TrEMBLA0A1E5VHT10.0A0A1E5VHT1_9POAL; Putative V-type proton ATPase subunit H
STRINGGRMZM2G163233_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP491455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-19bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]