PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do020673.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | CPP | ||||||||
Protein Properties | Length: 158aa MW: 18224.8 Da PI: 8.4419 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 27.4 | 6.9e-09 | 17 | 43 | 15 | 41 |
TCR 15 kkYCeCfaagkkCseeCkCedCkNkee 41 + YC+Cf+ + +Cs+ C+C+dC N+e+ Do020673.1 17 RSYCSCFHGKGFCSHPCNCQDCWNRED 43 58**********************986 PP | |||||||
2 | TCR | 27.7 | 5.4e-09 | 76 | 98 | 2 | 24 |
TCR 2 ekkgCnCkkskClkkYCeCfaag 24 + kgC+C ks C+k+YC Cf++ Do020673.1 76 HVKGCTCAKSGCKKNYCLCFKNA 98 78******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 12.022 | 9 | 121 | IPR005172 | CRC domain |
SMART | SM01114 | 0.016 | 13 | 44 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.8E-5 | 18 | 41 | IPR005172 | CRC domain |
SMART | SM01114 | 0.0081 | 75 | 107 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.0E-5 | 78 | 98 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
LLLLCLAHHQ IFLPRRRSYC SCFHGKGFCS HPCNCQDCWN REDRRTFVEE HAELRLGTKP 60 GACQSKDSAL TGDKNHVKGC TCAKSGCKKN YCLCFKNARP QRNYLLSYMI TQTPLCRVPQ 120 TLTHEAPTTT TRRVPMQVEI DEADQLQNIG DRYDFTWH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do020673.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814306.1 | 8e-33 | protein lin-54-like | ||||
TrEMBL | A0A1E5VMS6 | 1e-115 | A0A1E5VMS6_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | Si002871m | 1e-31 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12267 | 23 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04850.1 | 2e-11 | Tesmin/TSO1-like CXC domain-containing protein |