PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do020469.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 1083aa MW: 116935 Da PI: 7.7949 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54.3 | 2.5e-17 | 815 | 864 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq Do020469.1 815 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 864 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51375 | 6.149 | 335 | 365 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.38 | 340 | 366 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 9.525 | 366 | 400 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 0.0017 | 368 | 401 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.011 | 368 | 395 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 5.13 | 401 | 435 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 11.181 | 469 | 503 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 2.8E-10 | 469 | 518 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 8.9E-4 | 470 | 499 | IPR011990 | Tetratricopeptide-like helical domain |
TIGRFAMs | TIGR00756 | 1.3E-6 | 472 | 498 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 6.259 | 506 | 540 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 8.9E-4 | 538 | 601 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 7.673 | 541 | 571 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.063 | 546 | 569 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 4.6E-13 | 574 | 620 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 13.121 | 574 | 608 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 2.7E-8 | 576 | 609 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 7.092 | 609 | 644 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 6.588 | 645 | 675 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 8.9E-4 | 707 | 731 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 6.796 | 713 | 747 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:4.10.280.10 | 1.8E-23 | 810 | 885 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-18 | 811 | 881 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.78 | 813 | 863 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.2E-15 | 815 | 864 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.36E-16 | 815 | 868 | No hit | No description |
SMART | SM00353 | 2.6E-13 | 819 | 869 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1083 aa Download sequence Send to blast |
MCCWRRRRGV YVPPRAGVGA GGPIGNFLKT HDFLQPWEKP GAVPSPAFGA DDSSHHQQPV 60 ALPLPGGIGT FTISPAPVSV ARPAAAVVKA EPPFVLWGQP AALQPVARGA GHQQQWALPF 120 AGAGQAGPSP PDRKGRGGGG GGGRAMESGS RSSGGAGFDD DDGLAARREV SSSLQVFRVG 180 LAELTVRKRT GSVEGMSSHA PTAPGTGGSQ WQPAQVHQLH AHLLVSGRLL GSPTIAALAL 240 LRAACRVSAS PCLRPLARHL LDEIPHPPPQ LLHAAARLAS RLRLPSLTLC HYLALRARHP 300 GFLPPAPAIA DVLKSVPGRA AHAHALRVAT HAVDARFLDN TLIAMYFACG NAWSARQVFE 360 GMRDRDVVSW TSLISGLVQN GCPLQGLRHF ASMMHSEVCP DFVLLVSVLK AYMELDDLPG 420 ATAAHSLVVK SGFDNELDVV ITLTSMYAKF GCIVAARALF DRVPTPRVNV ILWNAMISGY 480 SKNGLANEAV QLFKQMRKVA RSMIPDSVTL RSVILACAQL GSVELAEWME DYVQGSEYRD 540 DVLVNTALID MYSKAGSIAR AHTVFERMQV QVRDVVVWSA LIGGYGVHGH FKEAVALFEE 600 MKNAGVKPND VTFLGLLSAC NHVGAVEKGW SYFHSMKHDY GIEPRHQHYA CVVDLLARAG 660 HLDRAYQFIK DMPIKPEMSV WGALLHGCKM HGHSDMALAE CAAQHIFELE HSNAGHYVQL 720 ANLYASVGMW SQVAGVRVTM RERGVSKATG CSSIDINGEL HSFHAGDHSH PRAAEIFALL 780 SLLSPTPAGE LTVRMDRKGG SCSDGGMDQR PNTPRSKHSA TEQRRRSKIN DRFQILRELL 840 PHSDQKRDKA TFLLEVIEYI RFLQEKVQKY EATFPEWNQE NAKMLPWSKE QIPGDSLPVP 900 SHFMRNGSSP GSNFTGKLDD NHNTVTYAAA SGAQDQAETD HMASVCDRSV ETPANITNNA 960 LSQSQPQWTG PSPVNDCAVN EMLNNQQLAI DEGTISISSQ YSQELLNSLT HALQSSGVDL 1020 SEASISVQIN LGKRAVKRPA ADVPSKEPTD PASSDEIDHQ LAMLGGGAED LSHAAKRQKP 1080 GNT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5iww_D | 4e-54 | 340 | 698 | 17 | 322 | PLS9-PPR |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 143 | RGGGGGGGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do020469.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067694 | 0.0 | BT067694.1 Zea mays full-length cDNA clone ZM_BFc0130K07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012699577.1 | 0.0 | pentatricopeptide repeat-containing protein At3g12770 | ||||
TrEMBL | A0A1E5V239 | 0.0 | A0A1E5V239_9POAL; Pentatricopeptide repeat-containing protein | ||||
STRING | OMERI09G10400.2 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 3e-61 | BES1-interacting Myc-like protein 2 |