PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do020468.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Dof

Protein Properties

Length: 259aa MW: 26591.4 Da PI: 8.7971

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do020468.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122	2.1e-38	47	104	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +ss Do020468.1 47 GDPCPRCESRDTKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGTRKSSSSS 104 578**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	47	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	48	102	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-32	49	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MQEPGRRAAP PFAGVDLRRP KGYPAPAPVA KAEEHASLLA SSAPAAGDPC PRCESRDTKF 60 CYYNNYNTSQ PRHFCKSCRR YWTKGGSLRN VPVGGGTRKS SSSSSSSSAS SSPAATKATK 120 RSKNSKRRRV APAPDPASGT DASAAAAITG VANTARTPAP STVAAATVDD TKKPTAPEPA 180 ATVVAATEEP SAPPAAVGGF TDDTSTAPGN GLADVDSGGG KELLPDPNHF EWPSSCDLGS 240 YWGTGVFADT DPVLFLNLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	129	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do020468.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957110.1	1e-115	dof zinc finger protein MNB1A
Swissprot	P38564	8e-54	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	A0A1E5V289	0.0	A0A1E5V289_9POAL; Dof zinc finger protein MNB1A
STRING	Si030774m	1e-115	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	5e-26	DOF zinc finger protein 1

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]