PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do020363.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 412aa MW: 44419.9 Da PI: 4.5367 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.6e-19 | 62 | 111 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Do020363.1 62 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 111 789******.7*********33....35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.39E-30 | 61 | 118 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-27 | 62 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.599 | 62 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.7E-35 | 62 | 125 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-13 | 62 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-19 | 62 | 119 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.1E-8 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-8 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MALKRKASTG LTDDLMISYG DHSRASPALA TENSFVPAAA SRDQSWAEAV GAVAAAQRGR 60 KRFVGVRQRP SGRWVAEIKD TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GSNTRTNFWP 120 RAAGAAAPAE AAVTLQLQHP PPPPSALPSK VTNLLLLRLK KARSSAGAVT QAAPVQHQQA 180 QQGYGGQEEY SFQVDDFLSY DSTCDELQVV KRQEGSNCSQ ETEDDGDEEE DEEPLDFGFM 240 DKQPSPAREV DDAGLYSPFE MVAGELGGAA EVEPSAYGVE GPSEPPGAIN EVMKRMKYER 300 KISASFYALS GVSECLRLRL GDGIDHDGAR RNELALSGLR DACRKQQHHE QQKQEVVDEG 360 ANNVVGHEES SSCSNSVSSE ATSSSPEAAS SPQEAKAVDS DMWSSLDLPP IC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 62 | 118 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do020363.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727704 | 6e-82 | KJ727704.1 Zea mays clone pUT5643 AP2-EREBP transcription factor (EREB142) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986381.1 | 0.0 | ethylene-responsive transcription factor ESR1 | ||||
TrEMBL | A0A1E5V2Q1 | 0.0 | A0A1E5V2Q1_9POAL; Uncharacterized protein | ||||
STRING | Si038848m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-22 | related to AP2 11 |