PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020346.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family BES1
Protein Properties Length: 596aa    MW: 65592.1 Da    PI: 4.6116
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020346.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822121.88.9e-3861135379
      DUF822   3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleea 79 
                 s r++  +E+E++k+RER+RRai+ +i+aGLR++Gny l++raD+neV++AL+reAGwvv +DGtt++ + +    a
  Do020346.1  61 SSRRRAREEKERTKLRERQRRAITGRILAGLRQHGNYSLRARADINEVIAALAREAGWVVLPDGTTFPSSPSSA--A 135
                 7899999************************************************************9554444..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.4E-3561195IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514455.82E-117248592IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.1E-31251333IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.4E-15257333IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-8288302IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-8309327IPR001554Glycoside hydrolase, family 14
PfamPF013732.1E-41346473IPR001554Glycoside hydrolase, family 14
Gene3DG3DSA:3.20.20.807.7E-65346472IPR013781Glycoside hydrolase, catalytic domain
PROSITE patternPS005060353361IPR018238Glycoside hydrolase, family 14, conserved site
Gene3DG3DSA:3.20.20.803.1E-28478590IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.1E-10480578IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MQQAAGLGED EDEEMGVKEE EDDDDEEEDD AEEDGYSMDP CPVAVASPPG TGSGGGGRAN  60
SSRRRAREEK ERTKLRERQR RAITGRILAG LRQHGNYSLR ARADINEVIA ALAREAGWVV  120
LPDGTTFPSS PSSAAAAAAQ PARPVMVVAA APPCTPLALP GSPALPLRGI SPVAARPISH  180
RPAPASSILL SPPRCAAASR PPADDVVPDG NCSDLLAVPV PMDPTVAEET AVTKQVPEVA  240
PRPPERDFAG TPYVPVYVML PLGVVNGNGE VVDVDELVGQ LRVLKAAGVD GVMVDCWWGN  300
VEAHRPQEYN WTGYKRLFQM IRELKLKLQV RFSLLMLLTY FSGQIAQVVM SFHECGGNVG  360
DDVSIPLPHW VTEIGKSNPD IYFTDRAGRR NTECLSWGID KERVLQGRTA VEVYFDFMRS  420
FRVEFDEYFE DAIISEIEIG LGACGELRYP SYPAKHGWKY PGIGEFQAID NVFFFSATTV  480
LKKYDAALNF TCVELRTMDQ HEVYPEAFAD PEGLVLNAAW DAGIQVASEN ALPCYDRDGF  540
NKILENAKPL NDPDGRHLFG FTYLRLSKVL LERPNFFEFE RFVKRMHGEA VLDLHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A4e-7325358911444BETA-AMYLASE
1q6c_A4e-7325358911444beta-amylase
1q6g_A4e-7325358911444beta-amylase
1v3i_A4e-7325358911444Beta-amylase
1wdp_A4e-7325358911444Beta-amylase
1wdr_A4e-7325358911444Beta-amylase
1wds_A4e-7325358911444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020346.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639001e-139BT063900.1 Zea mays full-length cDNA clone ZM_BFc0118E07 mRNA, complete cds.
GenBankEU9569051e-139EU956905.1 Zea mays clone 1577050 beta-amylase mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699441.20.0beta-amylase 2, chloroplastic
SwissprotO808311e-152BAM7_ARATH; Beta-amylase 7
TrEMBLA0A1E5VJ170.0A0A1E5VJ17_9POAL; Beta-amylase
STRINGSi028957m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.11e-106beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]