PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do020341.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 192aa MW: 19581.4 Da PI: 10.9125 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.2 | 3.4e-09 | 32 | 82 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r+a e Er RR+++ ++eL llP + ++ a iLe+A+ Y+ Lq Do020341.1 32 QRQAMVETERARRRHMSRLYAELGALLPDL----PPRAHRARILEEAIAYVGVLQ 82 6899999**********************6....389*************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.27E-11 | 29 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.3E-10 | 30 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.72E-6 | 31 | 82 | No hit | No description |
PROSITE profile | PS50888 | 11.903 | 31 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-6 | 32 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.6E-6 | 37 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 9.032 | 128 | 192 | IPR002912 | ACT domain |
SuperFamily | SSF55021 | 5.83E-5 | 135 | 174 | No hit | No description |
CDD | cd02116 | 0.00818 | 136 | 165 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.0E-4 | 136 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MAEEHPLALS LAAKTKGSPA GTTTVASAPP EQRQAMVETE RARRRHMSRL YAELGALLPD 60 LPPRAHRARI LEEAIAYVGV LQGTVAKLEA HGAFAGAGRR TTADGGGAAG AGTGAAELLA 120 ARKASCFAAR LPASRRPGAL TRVLEVLRRH GVHVLAATVT SNGGEATVTV TTAAVAPTVV 180 EGIKADISSS IA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do020341.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818588.1 | 5e-91 | uncharacterized protein LOC112894950 | ||||
TrEMBL | A0A1E5V8M3 | 1e-128 | A0A1E5V8M3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb01569.1.p | 3e-88 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9141 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 1e-10 | bHLH family protein |