PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020330.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 356aa    MW: 38114 Da    PI: 8.4166
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020330.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.3e-18253285133
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                 Cs+C++ +Tp+WR gpdg+ tLCnaCG++y+ +
  Do020330.1 253 CSHCHSPDTPQWRAGPDGPGTLCNACGIRYAAN 285
                 ******************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.23E-14246308No hitNo description
PROSITE profilePS5011411.596247285IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-16247301IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.2E-14251287IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.71E-13252308No hitNo description
PROSITE patternPS003440253278IPR000679Zinc finger, GATA-type
PfamPF003201.3E-15253286IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MRKQSHLSVS DVSDDLPECD GTCVPGGGLC CPDDPLELVL QYFSVPIQAP PSLAAPGIGG  60
SARREQQPLP RKNGFCDARA LGTRSAPGGG DVGDVWERDS RGLSSRVPEN MEATKCNMSC  120
LTGAVPTAIT TGSAHACGAS PPSAWTSPAS CTSLSCLTPT TSETESSAPV CQQLVWAGPR  180
KRRRPPVMCL KRPWSLEFPL HALPVAPPND SPGDNNENGN DLSKNTCNNV VGGGICRRRS  240
VPRQRNRQAQ RVCSHCHSPD TPQWRAGPDG PGTLCNACGI RYAANKLLPE YRPSTAPSFR  300
SDQHSNRHKK VVKLRKRKAN KALEVMHDPV PAPSSSPLSP KSDEFMDVCT HISTDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178184PRKRRRP
2179183RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432163e-80AC243216.1 Panicum virgatum clone PV_ABa003-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954732.11e-48GATA transcription factor 2
TrEMBLA0A1E5VCX10.0A0A1E5VCX1_9POAL; Uncharacterized protein
STRINGSi028169m1e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16076913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08000.22e-21GATA transcription factor 10