PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do020255.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 22156.3 Da PI: 8.1485 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.9 | 3.7e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ +l++++a+p+ +r+++++sl+yeA r+ +Pv+Gavg++ +++++l+q+++++ Do020255.1 2 SCNGCRVLRKGCSEGCVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPDAQRPALFRSLLYEAAGRTINPVHGAVGLLGTGNWHLCQAAVDT 100 6*********************9998656778***************************************************************9998 PP DUF260 95 all 97 +l+ Do020255.1 101 VLR 103 776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.91 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.4E-25 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEGCVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPDAQR 60 PALFRSLLYE AAGRTINPVH GAVGLLGTGN WHLCQAAVDT VLRGGAIGPL PELGGGCGAG 120 DGSGDLYGPA AAGKRAGGWS TFSTAKRVRK AAAAVEAPAP AEASCDLGLC LSPGSPPAPG 180 ERRAPLLRPG TPSMSSDESV TTTTTGGDRE PVLLNLFL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do020255.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP097640 | 1e-147 | FP097640.1 Phyllostachys edulis cDNA clone: bphyem213i10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983938.1 | 1e-137 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 1e-66 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A1E5VS55 | 1e-153 | A0A1E5VS55_9POAL; LOB domain-containing protein 37 | ||||
STRING | Pavir.Ia03080.1.p | 1e-127 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 7e-65 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
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