PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020227.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 597aa    MW: 63692.1 Da    PI: 8.2771
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020227.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11388431452
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                 +h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ +Y++
  Do020227.1 388 NHMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLAKTLDYMN 431
                 78999********************95.....599************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.567384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-16386453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-15387453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9388431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-12390439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-5399438No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MDNLFVLGQE SRLRILQRAA ARVPGCAYLC AWAALPAAQP PVSSSSAATS ARLLCCLDAW  60
LCDGGAGCRG DARRVRALFD AYRGSLCAAV SGCVPGWAHK DGRAFMELPA HDLTASASLP  120
VQQQFYQVVG NQMAAFMGCE SGEIEVGMST AASGSPMSLE SSLQQVFSED FFQQSLLEEL  180
LQLPPTRPSS PSSSLPSVSV DSPAAEVSTS LLRTMPVTPP VTTPSSGERN VPVPLHALHS  240
RPPLPVSAPF SRHGRAQFPS PEADDAAMAE AMLVVISASS SSALPTPSTA TAAPPPGNNH  300
HRGARRWPRQ RGTATTAFRA YNAALAPRAP WRPPGAPGQR MIKMGISILR RMHMLRFSRE  360
RTGGTPMAQR VQEEDEDLLP APTSSQLNHM ISERRRRERL NESFEALRGL LPPGSKKDKA  420
TVLAKTLDYM NILVAQISDL EARNRSLESR AHQQYANGGG WKERPYSSSE QQQVVVLQGL  480
SGTSDRVQVH VNVTAGGAST PSSSTGRPAA REVAVRVEAR AHVDVAELVP RVLAVIREMG  540
CFTVVAVDAR RPGGDGIAQA TFTLRATAGE FDEASLKEAV MKAAEDSAAT PPLSDDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392397ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020227.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792416.10.0putative transcription factor bHLH041 isoform X1
TrEMBLA0A3L6QIR40.0A0A3L6QIR4_PANMI; Uncharacterized protein
STRINGPavir.J40109.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-16bHLH family protein