PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do020125.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Nin-like

Protein Properties

Length: 371aa MW: 40262.6 Da PI: 5.8617

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do020125.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	66	5.7e-21	283	332	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++l+d+++yF+l +++AA +Lgvc+TvLK + R++ ++RWPhRkiks+ Do020125.1 283 RDLQLSDIARYFHLRMTEAAVQLGVCPTVLKTTSRKFRVSRWPHRKIKSI 332 689*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.811	272	353	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-19	285	332	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MQDDFDDVMY LLDIPDVVLD PPPLAAQAQN VTAGSSGNNN LVEWPARLDA SVDDSAPAHN 60 AAVAADPPST AQDVDASTSA AASTSSSSAA HQNALDCTRC HVLRDVLHSN GFEATKLSIH 120 GVAAVFYHAT LEVYRVNSEG LATDLTHQSY IDFRGRDYVW VKHYLTGYAQ QRAGGGYTLI 180 HDSISAFHDA LCTSMNYGGN ADDDRGEGME IVAAVVENGG GDQQKEFAAA ADDAAQAQSP 240 LIEQGDVPAA GPSEPSASNE QEQQEVHRPV GRSALAIQRE RARDLQLSDI ARYFHLRMTE 300 AAVQLGVCPT VLKTTSRKFR VSRWPHRKIK SIDNNIAKLR RKGNGGTAVM REMQKLTEAR 360 RKIYADLLRH Q

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MQDDFDDVMY LLDIPDVVLD PPPLAAQAQN VTAGSSGNNN LVEWPARLDA SVDDSAPAHN  60
AAVAADPPST AQDVDASTSA AASTSSSSAA HQNALDCTRC HVLRDVLHSN GFEATKLSIH  120
GVAAVFYHAT LEVYRVNSEG LATDLTHQSY IDFRGRDYVW VKHYLTGYAQ QRAGGGYTLI  180
HDSISAFHDA LCTSMNYGGN ADDDRGEGME IVAAVVENGG GDQQKEFAAA ADDAAQAQSP  240
LIEQGDVPAA GPSEPSASNE QEQQEVHRPV GRSALAIQRE RARDLQLSDI ARYFHLRMTE  300
AAVQLGVCPT VLKTTSRKFR VSRWPHRKIK SIDNNIAKLR RKGNGGTAVM REMQKLTEAR  360
RKIYADLLRH Q

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do020125.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321666.1	1e-117	uncharacterized protein LOC8084238
TrEMBL	A0A1E5VMS1	0.0	A0A1E5VMS1_9POAL; Uncharacterized protein
STRING	Si025242m	1e-161	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	5e-12	RWP-RK domain-containing protein