PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do020041.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 340aa MW: 37636.6 Da PI: 9.6457 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.2e-12 | 169 | 213 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h Er+RR+++N++f L+++lP+a +K +Ka+iL +A +Y++ L Do020041.1 169 HVLSERKRREKLNDSFKALKTVLPPA-----PKKDKASILMRARDYVNTL 213 7788*********************9.....7**************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.35E-17 | 163 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.926 | 164 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.46E-12 | 166 | 218 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-15 | 168 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-10 | 169 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-13 | 170 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MDMEEHGHAE APSSQSSTFR SFSGTPYETS SLMPASTNTT NSCHHAAEVS SLSLKTPLSP 60 VTYGDRHYGQ YCYGNVDTIP NLEEFTCQGE AHHERAQRRN GHGGAFMPYS RHLGTKKKPK 120 PGSGGQRAIK AAMSALARMH MVRLSQRQRY QMEMAAAPPT GSNGNQLRHV LSERKRREKL 180 NDSFKALKTV LPPAPKKDKA SILMRARDYV NTLKSRVSEL EERNRMLVEL QHHCNNGGDR 240 DDVSGEKIEI DINRATAGET SQKFQLKIVV RSGCNAMDAV VSILECLKEI GDVRLAAMDT 300 GSRATTLTLQ MKTSRSDDNC LKESVIRSIK GVMQSKIETA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 177 | ERKRRE |
2 | 173 | 178 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do020041.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809512.1 | 1e-164 | putative transcription factor bHLH041 isoform X1 | ||||
TrEMBL | A0A1E5UQ25 | 0.0 | A0A1E5UQ25_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J01638.1.p | 1e-147 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2900 | 31 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 7e-23 | bHLH family protein |