PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020013.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 505aa    MW: 54704.2 Da    PI: 6.6036
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020013.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS293.55.5e-90274743374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 ++L ecA  +++g++e+a + L++   l + +g  p+ Rla  ++ +La+rl r +v+ ++ al   +++  n   + aa++ f+e+sP++k +  + N
  Do020013.1  27 RALCECAADIEAGSTEKAARRLSQATGLTAATGdGPLPRLAVLVADGLARRLIRpMVPAVAGALIDPSDH-LNRCCVRAARRSFFELSPFPKAAVAVVN 124
                 689*************************8888857*******************7888888777444443.455666689999**************** PP

        GRAS 100 qaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.. 194
                 + Ilea+e+e+ vH+iDf   + q+ QW+ Ll+ + sRpeg+p+lR+T v++    +ke l ++ e L++ A+ l+vpf+ +  va ++e+l++++L  
  Do020013.1 125 RVILEAMENEKNVHVIDFAgpAAQPCQWIQLLRDFHSRPEGAPHLRLTIVQD----DKEFLANVSESLTDEADDLDVPFQVHC-VAGQIETLDFNDLhg 218
                 ******************75589*****************************....***************************.7999******99966 PP

        GRAS 195 ..rvkpgEalaVnlvlqlhrll......................................................................desvsle 221
                    +k+gEa a+ +  qlhrll                                                                        + +++
  Do020013.1 219 vlGLKSGEARAIVCTKQLHRLLasvddaasssfsaghhfnqmasiarlqqmaassscppsiggggvacevhddddsyrspatplgfvsppltTPRFQMP 317
                 667889************************************************************************************995555555 PP

        GRAS 222 serdevLklvk.slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWr 316
                  +   +L++ +  +sPkvvv++eqea+hn+ sF +rf+eal+yy+a fdsl+a +++      er+ vEr++lg+ei++v+  ega+r erh +l++W 
  Do020013.1 318 PALVGFLSAARaAVSPKVVVLTEQEASHNGVSFRKRFTEALNYYAAAFDSLDAAAAAYRrpvAERADVERAVLGEEIRDVLLREGARRLERHDRLHQWG 416
                 56666****99459*************************************877665555679************************************ PP

        GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  r+e aGF++vpls+ a  q + +lr+++++g +  e+ g+l+l+W++ pL+svSaWr
  Do020013.1 417 LRMEVAGFRSVPLSYIAIRQGDDMLRMCGVRGCESREHGGCLLLCWRSWPLYSVSAWR 474
                 *********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.0681454IPR005202Transcription factor GRAS
PfamPF035141.9E-8727474IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MQHDGSMCGP ALPQQQQQHG RVARLGRALC ECAADIEAGS TEKAARRLSQ ATGLTAATGD  60
GPLPRLAVLV ADGLARRLIR PMVPAVAGAL IDPSDHLNRC CVRAARRSFF ELSPFPKAAV  120
AVVNRVILEA MENEKNVHVI DFAGPAAQPC QWIQLLRDFH SRPEGAPHLR LTIVQDDKEF  180
LANVSESLTD EADDLDVPFQ VHCVAGQIET LDFNDLHGVL GLKSGEARAI VCTKQLHRLL  240
ASVDDAASSS FSAGHHFNQM ASIARLQQMA ASSSCPPSIG GGGVACEVHD DDDSYRSPAT  300
PLGFVSPPLT TPRFQMPPAL VGFLSAARAA VSPKVVVLTE QEASHNGVSF RKRFTEALNY  360
YAAAFDSLDA AAAAYRRPVA ERADVERAVL GEEIRDVLLR EGARRLERHD RLHQWGLRME  420
VAGFRSVPLS YIAIRQGDDM LRMCGVRGCE SREHGGCLLL CWRSWPLYSV SAWRPDRGSA  480
YGVGSEYLPL SAPPAPAPSI EELMC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-173147524379Protein SCARECROW
5b3h_D2e-173147524379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980153.20.0scarecrow-like protein 3
TrEMBLA0A1E5WC770.0A0A1E5WC77_9POAL; Scarecrow-like protein 3
STRINGSi028262m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-71scarecrow-like 3