PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do019788.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 398aa MW: 42373 Da PI: 6.0117

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do019788.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.5e-09	208	255	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Do019788.1 208 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 255 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-16	202	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.71E-10	202	259	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.7E-16	204	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.301	204	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-6	208	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.0E-10	210	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MEGRAGGGDY ITSLLSSSPR LDFGVLGAVP AAMLDGAAAS GGDGGEDCLE RFCGDPGFAE 60 RAARLSSFSG HRFAAAATGL FGLPPPASNG EFAGSREASS VSDPASAMRD ANAKKRKAPA 120 AAKGKGKESS AQAGEQKDPD AKRCKTDGAE RKKEEGDVKP KSEQAGSDSS VEDGGQQKPS 180 GKGRNAKPVE PPKDYVHVRA RRGQATDSHS LAERVRRERI SQRMKVLQDL VPGCNKVIGK 240 ALMLDEIINY VQSLQRQVEF LSMKLATVNP LDFSNLPTLL QKDMFQACGP SSSSVFSLES 300 SSSGFPFSDQ GDVFQSFVPN GLENQCGLNP LDLALSQATN AQYAFQDGTA STNLQQRNFW 360 EEDLQSVFHI DNGQSQENGV SAQSFHGQLQ AGHMKMEF

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MEGRAGGGDY ITSLLSSSPR LDFGVLGAVP AAMLDGAAAS GGDGGEDCLE RFCGDPGFAE  60
RAARLSSFSG HRFAAAATGL FGLPPPASNG EFAGSREASS VSDPASAMRD ANAKKRKAPA  120
AAKGKGKESS AQAGEQKDPD AKRCKTDGAE RKKEEGDVKP KSEQAGSDSS VEDGGQQKPS  180
GKGRNAKPVE PPKDYVHVRA RRGQATDSHS LAERVRRERI SQRMKVLQDL VPGCNKVIGK  240
ALMLDEIINY VQSLQRQVEF LSMKLATVNP LDFSNLPTLL QKDMFQACGP SSSSVFSLES  300
SSSGFPFSDQ GDVFQSFVPN GLENQCGLNP LDLALSQATN AQYAFQDGTA STNLQQRNFW  360
EEDLQSVFHI DNGQSQENGV SAQSFHGQLQ AGHMKMEF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do019788.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821024.1	0.0	transcription factor bHLH78-like isoform X1
TrEMBL	A0A1E5V527	0.0	A0A1E5V527_9POAL; Transcription factor bHLH62
STRING	Si013867m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-56	bHLH family protein