PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do019785.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | WRKY | ||||||||
Protein Properties | Length: 175aa MW: 19508.1 Da PI: 9.4661 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.5 | 2e-31 | 111 | 167 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgs fprsYY+Ct+++Cpvk+kve++ d++v e+ Y+geHnh+k Do019785.1 111 DGYNWRKYGQKKVKGSGFPRSYYKCTHPSCPVKRKVETTV-DGQVAEVAYSGEHNHPK 167 9***************************************.***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-26 | 107 | 168 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-24 | 108 | 168 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-31 | 109 | 167 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-24 | 111 | 166 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.928 | 111 | 168 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MQHHEKIAAL KPVASRPFSR SLSKLLQDFT ATGSPPITVL EATDLVRPKV TRFPSPPSPS 60 DLPTETTATI DAVSDTTCEE MEVDTEQANC CDHLTTHHTV KKPMGGRLSF DGYNWRKYGQ 120 KKVKGSGFPR SYYKCTHPSC PVKRKVETTV DGQVAEVAYS GEHNHPKPHR PRKPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-16 | 111 | 168 | 16 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do019785.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819931.1 | 1e-100 | probable WRKY transcription factor 3 | ||||
Refseq | XP_025819932.1 | 1e-100 | probable WRKY transcription factor 3 | ||||
TrEMBL | A0A1E5V5C4 | 1e-127 | A0A1E5V5C4_9POAL; Uncharacterized protein | ||||
STRING | Si014939m | 4e-97 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2325 | 29 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.2 | 1e-28 | WRKY family protein |