PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do019740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 21634.4 Da PI: 8.6258 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65 | 1.5e-20 | 35 | 85 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 + +GVr ++ +gr++AeIrd + r r++lg+f+t+e+Aa+a++aa++kl+g+ Do019740.1 35 RLRGVRKRP-WGRYAAEIRDpV-----RkSRVWLGTFDTPEQAARAYDAAARKLRGP 85 679******.**********44.....55**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.6E-14 | 34 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.05E-18 | 34 | 91 | No hit | No description |
PROSITE profile | PS51032 | 23.156 | 35 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-30 | 35 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-21 | 35 | 93 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.0E-9 | 36 | 47 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-29 | 37 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MAPKSSTSSP AGSSSTSSDG SALRAAAAAA AEQPRLRGVR KRPWGRYAAE IRDPVRKSRV 60 WLGTFDTPEQ AARAYDAAAR KLRGPGATTN YPAAPALAPA ASAADASSTT SSSCRDDGSL 120 AAATTVAVAA PAPSSSSLDL RLELPAMVAA QPYLFLDPTP TVLPAAAAQR QFLPMKSEDQ 180 ERSCCYAGSS SPAVVCLGLD LNLPPPAEMV M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-21 | 28 | 98 | 7 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do019740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970153 | 3e-73 | EU970153.1 Zea mays clone 340982 ethylene-responsive transcription factor 4 mRNA, complete cds. | |||
GenBank | EU975388 | 3e-73 | EU975388.1 Zea mays clone 489369 ethylene-responsive transcription factor 4 mRNA, complete cds. | |||
GenBank | KJ727706 | 3e-73 | KJ727706.1 Zea mays clone pUT5645 AP2-EREBP transcription factor (EREB209) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821472.1 | 1e-49 | ethylene-responsive transcription factor ERF098-like | ||||
TrEMBL | A0A1E5V4M1 | 1e-143 | A0A1E5V4M1_9POAL; Uncharacterized protein | ||||
STRING | Si014474m | 3e-45 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14446 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 1e-18 | ERF domain protein 11 |