PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do019699.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 269aa MW: 29074.3 Da PI: 4.4471

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do019699.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00045	211	234	32	55
..TTS-STCHHHHHHHHHHHHHHH CS HLH 32 kapskKlsKaeiLekAveYIksLq 55 + +++K++ +++Le+Av+Y+k Lq Do019699.1 211 SSGGGKVDISTMLEEAVQYVKFLQ 234 56899******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MESSEASWHS FDPSVAVEDS EAMAQLLAVQ YFGNEQKQPA AAAMYWPACQ EADQYYGSAP 60 FYMQQPNPGA NCYDHAGYYG GGVVTMTGDF FVPDEQLGDP SFMLDLNLDF EDQDGGGNVP 120 AACKRKLEDR KDKSTTCTVP KKKSCSAAMP AQKKGKNAQS KKAQKGACSR GNQEKSDGDG 180 NMQCSGNYLS DDDSLEMTAC SNVSSASRKS SSGGGKVDIS TMLEEAVQYV KFLQVQIKLL 240 SSDDMWMFAP IAYNGVNVGL DLKISPPQQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do019699.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796821.1	1e-165	transcription factor bHLH54-like
TrEMBL	A0A1E5V3I9	0.0	A0A1E5V3I9_9POAL; Uncharacterized protein
STRING	Pavir.Ia04640.1.p	1e-170	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11680	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	6e-25	bHLH family protein