PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019656.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 351aa    MW: 37687.3 Da    PI: 6.3151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019656.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-092773171055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 rr R+riN+++  L++l+P+      +K++ +++Le+Av+Y++ Lq
  Do019656.1 277 RRXRERINERLKILQKLVPNG-----TKVDISTMLEEAVRYVRFLQ 317
                 888****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.577267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-13269333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-12272330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-10273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6277317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-5287320No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSQADLAAWL ESRDAHWCSQ YQAAPAPDEE SEIVAQFLAA PYPYQNDDDD DEQEQKHQHH  60
KLGEISATSS TYWPEPGHVV TDPAGKGACY WPSNGAASNS NSSGSGAYFD GSGCCYYYLA  120
ESDVSLGINT LTTLPCTSSI DLNLLGDGAE EGTACFVHSV TPNLSSPPDH NHTAGHHNGG  180
NDGAAAPAVV SLPKRKAQAG HDGGDLVRHK KKGKKAASKT AQKCSQESTQ SRGRCSAEES  240
NCSEVNRRTG AHGGAGGNAK ARAAKGSATD PQSLYARRXR ERINERLKIL QKLVPNGTKV  300
DISTMLEEAV RYVRFLQQQI NMLSSDEMWM YAPIAYNGMS LGIDLKISPP Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193214KRKAQAGHDGGDLVRHKKKGKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019656.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796889.10.0transcription factor bHLH85-like
TrEMBLA0A1E5VCQ90.0A0A1E5VCQ9_9POAL; Transcription factor bHLH84
STRINGSi039720m1e-179(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144452123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-41bHLH family protein