PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019639.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 541aa    MW: 57815.4 Da    PI: 8.6721
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019639.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.1e-12354395854
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ErrRR+r+N++f++Lr+llP+       K +Ka++L  ++eY+++L
  Do019639.1 354 SERRRRERLNESFQTLRSLLPPG-----SKKDKATVLANTTEYMHKL 395
                 7********************95.....599************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.504346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-16348415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15350413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-10354395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-5361395No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MDAIFALAAG SRARVLERAA TRIPGCLYIC LWAPVITGQL PPSHLRCVDA WISNGGGGGR  60
ARAMFQAYRG ALCAIVRGCV PGWAFKDGSA YMELPEPDLS ASASLQVQTQ FYHEAGTQMG  120
VFMGCDHGEI EVGLSNASAP AVAGHVQQSL REELIQLTPA VPSSSSSSLP SLSIGSPEYS  180
SLIRSMATTA AAAATAAEPS SSQERQPLPQ HTAVQLPGLL PPVYNPHGHA PFLGPEDEDA  240
AMARAMLAVI SSSVLPPSPP WLVRHRMQRS SPRRQTGAFR AYNAALSPRA RPRPGVPGQR  300
MVKTAIALMQ SVHMAMRNRE LAAARQQDDA AAAQTPPAPP QQQHTSSQLH HMFSERRRRE  360
RLNESFQTLR SLLPPGSKKD KATVLANTTE YMHKLIADVS DLERRNRQLE AQLGLPLETQ  420
QTGSDDSSSE RVQVDVTTSA STSSSTSGQP QEVSIRVTVR AECDLSEVVV AMLASIKKLG  480
RFAVVTVDAR QRSNGHAQIS ITLRVAAGGN DDETSLKEAV AKAVEDAVAR PPSPPPQQGS  540
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354359ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019639.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3616663e-35AK361666.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1146D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681563.10.0putative transcription factor bHLH041
TrEMBLA0A3L6S1000.0A0A3L6S100_PANMI; Uncharacterized protein
STRINGSi007981m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-27bHLH family protein