PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019638.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 358aa    MW: 38216.5 Da    PI: 9.1132
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019638.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.4e-17179212134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Do019638.1 179 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 212
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.5E-13171213No hitNo description
SMARTSM004012.1E-16173224IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268177209IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-14177212IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.77E-15178231No hitNo description
PROSITE patternPS003440179204IPR000679Zinc finger, GATA-type
PfamPF003202.7E-15179212IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSAIYMTQLN TALPLMEGDH HQDHHHHQGH FQAFTLPKDP PILFPFVISS SSASNSSMSY  60
GSADHHLLRQ HQAMLEPQHM IGGSSAASVF ATPFPTVESI RDDMIEPSSY DPYDMGKLQV  120
GGGSLETIGS WTAPAKMRIT RKATADPGAV KKPRRRAQGY EDMMSMSGGQ PNLGVIRVCS  180
DCNTTKTPLW RSGPCGPKSL CNACGIRQRK ARRAMMASGG GSGPVTADGT KATTATPRDA  240
MATAHPKVKK EKRVDVDRSL PFKKRCKVVQ DHADVAAPPP ATAHKAVVQP TDEAVDAGLG  300
RDLIGNIGLI SWSRSPAAHP SSSASCSFRA SPGLPVQQDE ITDAAMLLMT LSCGLVRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019638.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812836.10.0putative GATA transcription factor 22
SwissprotQ6YW481e-73CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A1E5VZ480.0A0A1E5VZ48_9POAL; Uncharacterized protein
STRINGPavir.Db01250.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.15e-21GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]