PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019395.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 500aa    MW: 51064.9 Da    PI: 6.7932
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019395.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.3e-29241299259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d++++++tYeg+Hnh+
  Do019395.1 241 PDGCQWRKYGQKISKGNPCPRAYYRCTVApHCPVRKQVQRCADDTSILITTYEGQHNHQ 299
                 69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-30228301IPR003657WRKY domain
SuperFamilySSF1182903.27E-26238301IPR003657WRKY domain
SMARTSM007747.1E-35240300IPR003657WRKY domain
PROSITE profilePS5081127.359242301IPR003657WRKY domain
PfamPF031069.4E-26242299IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEVAVERPTP VKEEKGTDAK PEMAAIGSAL PIVFESFPST QGDASIKQEE RRLEAAKAEM  60
GEVREENERL KSMLTRIVNQ YQLLHTHFLD VVKVHEQAAA KAKLPAAPAP APAADDVEDP  120
DDLVSLSLGT RSNGARRKGH ERSSSSSGTA DESQLSLGLG IARGSGLSSV EDDKASGASA  180
PAAPVLNLSS DSSSADDTTK LAQDAAAPGT SRKSPSGGAG TGEGADDEVQ QQAKKARVSM  240
PDGCQWRKYG QKISKGNPCP RAYYRCTVAP HCPVRKQVQR CADDTSILIT TYEGQHNHQL  300
PPAATAMAST TSAAAAMLTS GSTTSSAASL AHGHHLPLAA AGLLGPTTMV STAASCPTIT  360
LDLTTPAPPH SLMHSSPYAA AAAAAAAADY ESKAVPAAWS SGYLAYGGAH PSYYAKSSPA  420
LAMGHLFGGG LGVSSRPEQI YGAQSYLQRT SSLGGGHGAV APAVTDTLAK AITSDPSFQS  480
ALAAAITSVI GSGGAAAAQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-212423031676WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019395.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586050.0KU058605.1 UNVERIFIED: Panicum miliaceum WRKY19-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817880.10.0probable WRKY transcription factor 72
TrEMBLA0A1E5UKV30.0A0A1E5UKV3_9POAL; Putative WRKY transcription factor 72
STRINGPavir.J22708.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-51WRKY DNA-binding protein 72