PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019393.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 234aa    MW: 25008.8 Da    PI: 6.6594
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019393.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-29123181159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+++d+++v++tY g Hnh 
  Do019393.1 123 LDDGFKWRKYGKKAVKSSPNPRNYYRCSAEGCGVKKRVERDRDDERYVVTTYDGVHNHA 181
                 59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-31110183IPR003657WRKY domain
SuperFamilySSF1182908.89E-27115183IPR003657WRKY domain
PROSITE profilePS5081131.548118183IPR003657WRKY domain
SMARTSM007745.8E-33123182IPR003657WRKY domain
PfamPF031063.4E-23124180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MATSLGLGHE ACYAAYPAPA SSYFFSSPEL VADSGAVMEF PPAAAMADCY FPGITGARAP  60
DYYYSPVPVF ANGGAAAAEN EMVNMSYVDD DGRRMMVSGS AGNGGRRPSQ RIGFRTRSEV  120
DVLDDGFKWR KYGKKAVKSS PNPRNYYRCS AEGCGVKKRV ERDRDDERYV VTTYDGVHNH  180
AAPGGDALLA PPRGAQDVLR PVCSAPWSAP TAPCDAWGTQ LHAVAAGHSS ESSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25113183777Probable WRKY transcription factor 4
2lex_A1e-25113183777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019393.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586131e-127KU058613.1 UNVERIFIED: Panicum miliaceum WRKY28-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968484.11e-93WRKY transcription factor WRKY24
TrEMBLA0A1E5UKU31e-170A0A1E5UKU3_9POAL; Uncharacterized protein
STRINGSi002621m4e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-25WRKY DNA-binding protein 51