PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do019374.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

LSD

Protein Properties

Length: 222aa MW: 23901.5 Da PI: 8.9767

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do019374.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	36.5	7.8e-12	19	43	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+ Crt+L YP GApsV+Ca+C++V Do019374.1 19 CHACRTVLLYPQGAPSVCCAVCQAV 43 ************************9 PP
2	zf-LSD1	46.4	6.5e-15	131	155	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+++L+YP+GA sV+Ca+C+++ Do019374.1 131 CGHCQITLMYPYGAHSVKCAICNHI 155 ***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	7.1E-12	16	46	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	9.7E-10	19	43	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	7.5E-10	128	156	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.6E-13	131	155	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MLIRSFFNSI SGMQSQIVCH ACRTVLLYPQ GAPSVCCAVC QAVTTVPPPG TLWMLGFLSS 60 ELGGGNNRLY TQSCSALAAR NSWRCNNVLL VRFRVSRCLT RDGSAYMWRL SNFADVYSQC 120 RHLNNIAHVN CGHCQITLMY PYGAHSVKCA ICNHITATGV NMVAPTTSAR PASNGSSYST 180 SSTSVPKSQP QNVTVVVENP MTVDDKGKLV SNVVVGVTTG KN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do019374.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982348.1	9e-83	protein LOL3
Swissprot	Q6ASS2	3e-63	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A1E5UJN6	1e-162	A0A1E5UJN6_9POAL; Protein LOL3
STRING	Si037185m	3e-82	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.8	1e-25	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]