PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do019333.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 251aa MW: 27115.9 Da PI: 7.0853 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 37.8 | 5.6e-12 | 1 | 28 | 102 | 129 |
NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 +kktLvfy grapkg+kt+Wvmhe+rle Do019333.1 1 MKKTLVFYMGRAPKGSKTNWVMHEFRLE 28 8************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02365 | 2.2E-4 | 1 | 27 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.271 | 1 | 54 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.84E-16 | 1 | 54 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MKKTLVFYMG RAPKGSKTNW VMHEFRLEGS SRHNNGSLRF NPKDEWVVCK VHHKNGEAKK 60 PTEQYSAGTP NVSSVVSDDA IEGDEFLVDS MINPMYFSSA ASSLASTTTI NPHNADYPIS 120 STAAGASTAA TSSSVDLPSN SFNDTRSIIN NLHQVALPNY YSAAPRSNGS SYSSSWNMLH 180 HADQNQAMGS SYNLHHQAMV AIRDEAITEF AGGLPSSSVT AGILQQNSLL GVPPQQKLGN 240 YGESYANSSY K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-15 | 1 | 60 | 119 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-15 | 1 | 60 | 119 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-15 | 1 | 60 | 119 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-15 | 1 | 60 | 119 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-15 | 1 | 60 | 119 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-15 | 1 | 60 | 119 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-15 | 1 | 60 | 119 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-15 | 1 | 60 | 119 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do019333.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098505 | 1e-47 | FP098505.1 Phyllostachys edulis cDNA clone: bphyem203e08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977422.1 | 1e-108 | NAC domain-containing protein 77 | ||||
TrEMBL | A0A1E5V4S6 | 0.0 | A0A1E5V4S6_9POAL; NAC domain-containing protein 77 | ||||
STRING | Si010417m | 1e-107 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5120 | 30 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.1 | 5e-20 | NAC domain containing protein 1 |