PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019288.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 442aa    MW: 46779 Da    PI: 6.3715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019288.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH543e-17259305455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Do019288.1 259 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 305
                 6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.15E-19252309No hitNo description
Gene3DG3DSA:4.10.280.103.9E-21252313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-21253314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.559255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-14259305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-19261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MVGCGCSGDD DGHIELLWCN GHVVMQSQAP RKPPRPDKAA AAAAVQDDEA AAWFQFPVED  60
PLERDLFSEL FGEAQAGEAG SGRACKEEDE CVGEAAAPQS GLMPPPPRPA QAPLEKACLG  120
DLGDVSDGAA ATTAAGGECA ATATEAGESS MLTIGSSFCG SNYVQTPRAR APAPCYGAPP  180
PVKAGGRASE AATVTSSSMR PRSCTTKAGQ PSASAAHRSG KRKQSHATEI EDAEFESADV  240
TCEPAQKLTT VKRRRAAEVH NLSERRRRDR INEKMKALQE LIPHCNKTDK ASMLDEAIEY  300
LKSLQLQLQM MWMGGGMAAA AAPVMFPAGV HHYMQRMAVA PPHVASMPRM PFMAPPAVQS  360
PPGADPYTRY LAVDHLQPPP PPMGMGFYQQ QHQSPALPPP PPPAVPAGSL PTATARMTLP  420
SDGILHKKYE NCSKPEIQSM TS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252267RRRAAEVHNLSERRRR
2263268ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019288.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558762e-88BT055876.1 Zea mays full-length cDNA clone ZM_BFc0002C15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805663.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X3
TrEMBLA0A1E5W7T80.0A0A1E5W7T8_9POAL; Transcription factor PIF3
STRINGSi022196m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-29phytochrome interacting factor 3