PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019236.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TCP
Protein Properties Length: 271aa    MW: 28881.2 Da    PI: 8.8499
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019236.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.62e-2943112372
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 
                 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++  
  Do019236.1  43 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDL 112
                 78*************************************************************9999833 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.95144102IPR017887Transcription factor TCP subgroup
PfamPF036346.0E-2744105IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MISGNNQQAA DQELARKNAA VATSRQWSAQ TESRIVRVSR VFGGKDRHSK VKTVKGLRDR  60
RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLNAARHEID KLPPLQFPPQ DLMVGHLAPH  120
MQLAHEEKFG HIAAAAALAG DGAKVGQGDV DMDGSGAHHM GRFSGGYHRF MGLNSALGMV  180
SSAMAPYGSY TTGEAWNNSS VHDSGGAGGS PQVAAAAAAH HSPFPSLLSL APGPHQLVFY  240
SSEADQQFQV DSLGSQSLSL SSARAYHDQA S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2049103155Putative transcription factor PCF6
5zkt_B4e-2049103155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019236.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9702170.0EU970217.1 Zea mays clone 342355 TCP family transcription factor containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814168.11e-153transcription factor PCF5-like
RefseqXP_025814169.11e-153transcription factor PCF5-like
TrEMBLA0A1E5VMA20.0A0A1E5VMA2_9POAL; Transcription factor TCP5
STRINGSi002496m1e-151(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5