PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do019236.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | TCP | ||||||||
Protein Properties | Length: 271aa MW: 28881.2 Da PI: 8.8499 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.6 | 2e-29 | 43 | 112 | 3 | 72 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ Do019236.1 43 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDL 112 78*************************************************************9999833 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.951 | 44 | 102 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.0E-27 | 44 | 105 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MISGNNQQAA DQELARKNAA VATSRQWSAQ TESRIVRVSR VFGGKDRHSK VKTVKGLRDR 60 RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLNAARHEID KLPPLQFPPQ DLMVGHLAPH 120 MQLAHEEKFG HIAAAAALAG DGAKVGQGDV DMDGSGAHHM GRFSGGYHRF MGLNSALGMV 180 SSAMAPYGSY TTGEAWNNSS VHDSGGAGGS PQVAAAAAAH HSPFPSLLSL APGPHQLVFY 240 SSEADQQFQV DSLGSQSLSL SSARAYHDQA S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-20 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-20 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do019236.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970217 | 0.0 | EU970217.1 Zea mays clone 342355 TCP family transcription factor containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814168.1 | 1e-153 | transcription factor PCF5-like | ||||
Refseq | XP_025814169.1 | 1e-153 | transcription factor PCF5-like | ||||
TrEMBL | A0A1E5VMA2 | 0.0 | A0A1E5VMA2_9POAL; Transcription factor TCP5 | ||||
STRING | Si002496m | 1e-151 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 2e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |