PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do019125.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 28456.6 Da PI: 10.7387 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 27 | 72 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia+++ gR++k+c++rw++ Do019125.1 27 RGHWRPGEDEKLRQLVEQYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 72 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.4e-18 | 79 | 123 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+ E+e+l++a++ +G++ W++I+r ++ gRt++ +k++w+ + Do019125.1 79 RRPFTAAEEERLLQAHRAHGNR-WALISRLFP-GRTDNAVKNHWHVV 123 679*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.922 | 22 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.96E-29 | 26 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-14 | 26 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 27 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-26 | 28 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.72E-14 | 30 | 71 | No hit | No description |
PROSITE profile | PS51294 | 25.692 | 74 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-15 | 79 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 81 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.77E-12 | 81 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MRDMVPSSST TTTSGRANSR SSSSCSRGHW RPGEDEKLRQ LVEQYGPQNW NSIAEKLEGR 60 SGKSCRLRWF NQLDPRINRR PFTAAEEERL LQAHRAHGNR WALISRLFPG RTDNAVKNHW 120 HVVMARRRRM RSHHRSAGTF LAGAGCSPPP RRPPFQCFHF GAPPAATKTT GSLCFAMPSS 180 GPSSLVSSSG TCNVRNHNVP ATIAFSSSRE VAATPNDHRR DMGKDDDNGG NDDDEDGGGA 240 AAKRKDDVLF FDFLGVGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-31 | 3 | 127 | 34 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-31 | 3 | 127 | 34 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-31 | 27 | 127 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-31 | 27 | 127 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do019125.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972498 | 1e-119 | EU972498.1 Zea mays clone 382267 myb-like DNA-binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978299.1 | 1e-137 | transcription factor MYB52 | ||||
TrEMBL | A0A1E5VMX8 | 0.0 | A0A1E5VMX8_9POAL; Transcription factor MYB44 | ||||
STRING | Si011791m | 1e-125 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 3e-55 | myb domain protein 52 |