PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019091.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 338aa    MW: 35877.6 Da    PI: 6.1649
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019091.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.6e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+llvd+++++G g+W++ ++  g++R++k+c++rw +yl
       Do019091.1 15 KGPWTPEEDKLLVDYINEHGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding56.65.9e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+T +E++l+++++  lG++ W++Ia +++ gRt++++k++w+++l
       Do019091.1  68 RGRFTDDEEKLIIHLHSILGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6171062IPR017930Myb domain
SuperFamilySSF466893.52E-3112109IPR009057Homeodomain-like
SMARTSM007176.6E-161464IPR001005SANT/Myb domain
PfamPF002495.7E-181562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-241669IPR009057Homeodomain-like
CDDcd001676.77E-131762No hitNo description
PROSITE profilePS5129427.47263117IPR017930Myb domain
SMARTSM007171.5E-1667115IPR001005SANT/Myb domain
PfamPF002494.4E-1668113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2670117IPR009057Homeodomain-like
CDDcd001678.20E-1370113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRSPCCDQD AGVKKGPWTP EEDKLLVDYI NEHGHGSWRR LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGR FTDDEEKLII HLHSILGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLGM  120
GIDPVTHRPR TDLNLLAGIP NLLAAANNLG GPLAAAARTT WDINALRLQA DAAKFQLLQG  180
LLRALAPPTA PSVDLMALLA ATNGGVSQPA GVDLQGTSRA QYDGLLNLPA LTSVSTVTPA  240
MSSFSGLLDS FGGGAGAGSP LAGDGLSSTE LGHSGVSNMT AAMAPPLVVA EECNAGGGCG  300
RGTETPCEET PASSPFEGLE NLNLDDDLNS DSWRDLLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-30151177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019091.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276651e-165KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811879.10.0transcription factor MYB93-like
SwissprotQ9SBF32e-82MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A1E5W8510.0A0A1E5W851_9POAL; Transcription factor MYB39
STRINGSi006790m1e-178(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.12e-79myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]