PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019025.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 807aa    MW: 89869.7 Da    PI: 4.8242
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019025.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.7e-07660702145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rgrW++ + + ++++ +q+G++ ++ I + ++  +t+ q++ ++ 
       Do019025.1 660 RGRWSKSDTDVFYQGLRQFGSD-FAMIQQLLP-DKTRHQVRAKFK 702
                      89********************.*********.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.4E-10649708IPR009057Homeodomain-like
PfamPF159635.4E-24653732No hitNo description
Gene3DG3DSA:1.10.10.601.1E-4657706IPR009057Homeodomain-like
SMARTSM007172.1E-7659707IPR001005SANT/Myb domain
CDDcd001678.45E-5662703No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MIDDEANFDN IFDASEEVQT AAKFRPKQRA KPRKTILSSR SAASNPTVEN GDGKLGALNQ  60
VNSSKELTSQ ERASLTCPGN ETVDDIAGAQ GILETPLEDV QTVPLGPPGG TSAADRISQD  120
DKHNADLSKL ATHQESLVVS DIQVSPTSSC GKTIDDIVEF GEMFCAQAKE ERVAKFQPKV  180
QAKLLKAAKS RKTNQKVECS TVDMATQNER GDNIQIRLHY DQLQDPECHG SVQTPDSEGL  240
LATGNSDVGN LASLDSVLEE SVQEETTVKF RPKLRPKPGI VSSKVVGISD NITAATSMVG  300
ICAENNDISS KRKDQETITT PATRSPQDVD ATVDLDYHNE LINSPIDGTQ SMIGEVSAEA  360
TCKSQSNVGK EKGKGKSVSF ALSDASGVIT PTDTNSEMSN FSDSCNDKLT DENLSNLPQQ  420
TAEKKSITEE YSNDREHKDN ESRCHEGEPL DHAVEQPKSG LMKTTEQETT EQEIRSSMKL  480
RSRKMSQKVV TPKHTDDYFD EDCVEPSLAE EDNDSGDDYT AGTKRKVRKK SRDGVEESQQ  540
QKVQKDKSQM SSQGRKRTLK DEVAEKSEKK LSHRIRQRRV KDPMKLSAAH LRLLQEARER  600
VNAKENPSGP SSNTSFQLDD MDDLDYRDEE ARNFDNDRTE NHVQNVIKLN YHSYMKKQTR  660
GRWSKSDTDV FYQGLRQFGS DFAMIQQLLP DKTRHQVRAK FKTEEKKNPL LVHDAIIHRS  720
GDNLYFKKVI NKLNIEDVAP PEINSTHKQD GASSERGPGK EDVLDDFIHG EEDDSNWLDE  780
EHGVQKHDLQ DEEDASGNDD GDVFDWY
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698058.10.0uncharacterized protein LOC101786485 isoform X2
TrEMBLA0A1E5VEU60.0A0A1E5VEU6_9POAL; Uncharacterized protein
STRINGPavir.Aa02686.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-29MYB_related family protein