PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019013.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 106aa    MW: 11688.8 Da    PI: 8.9938
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019013.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.7e-09451347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT    +l+ d+ + + ++   +W +Ia+ +g g+t++++k  ++k+
       Do019013.1  4 SWTYNQNKLFEDLLAVYDKDtpdRWQKIAQAVGGGKTAEDVKRQYYKL 51
                     7*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.6E-6154IPR001005SANT/Myb domain
PROSITE profilePS5129311.236156IPR017884SANT domain
SuperFamilySSF466896.61E-12357IPR009057Homeodomain-like
PfamPF002492.6E-6451IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-4557IPR009057Homeodomain-like
CDDcd001679.94E-51151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MSSSWTYNQN KLFEDLLAVY DKDTPDRWQK IAQAVGGGKT AEDVKRQYYK LEKDLKDIDS  60
EGSRQVSNHS SSGGSSSSGN SRGKTNDDKR YKALFNSGVL SGCVAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-174941090RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822700.12e-27uncharacterized protein LOC112898575
SwissprotQ1A1733e-20RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1E5W0S83e-71A0A1E5W0S8_9POAL; Uncharacterized protein
STRINGPavir.Ab02858.1.p4e-31(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-21RAD-like 6