PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do018945.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GATA | ||||||||
Protein Properties | Length: 357aa MW: 38159.2 Da PI: 4.6783 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.8 | 1.2e-17 | 272 | 308 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt+ Tp++Rrgpdg++tLCnaCGl+++ kgl Do018945.1 272 CHHCGTSAtaTPMMRRGPDGPRTLCNACGLMWANKGL 308 ******9999***********************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 15.373 | 136 | 171 | IPR010399 | Tify domain |
SMART | SM00979 | 9.6E-12 | 136 | 171 | IPR010399 | Tify domain |
Pfam | PF06200 | 5.5E-13 | 139 | 170 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.2E-15 | 196 | 238 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.334 | 196 | 238 | IPR010402 | CCT domain |
SMART | SM00401 | 4.9E-13 | 266 | 324 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.605 | 266 | 314 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.8E-12 | 270 | 320 | No hit | No description |
CDD | cd00202 | 1.84E-15 | 271 | 314 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.2E-16 | 271 | 313 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 272 | 299 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.2E-15 | 272 | 308 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MSHHDGSKPY QPRRGPERPP QPADEVAAPP PANVAPAVDH LAAVAADVEA LNRYAEEHHQ 60 QQQLQVHEQA VEEDEEEEDE EEDEMEEDED EQEGQDGGVG GEHVAMDADA AAAAAAAAAA 120 GAQMDPHGTM VPGAVPPMAT NQLTLSFQGE VYVFDSVSPD KVQAVLLLLG GRELNNLGNA 180 ASSSSSYSKR LNFPHRVASL MRFREKRKER NFDKKIRYTV RKEVALRMQR NRGQFTSSKP 240 KPDEIAASEM MTADGSPNWG LVEGRPPSAA ECHHCGTSAT ATPMMRRGPD GPRTLCNACG 300 LMWANKGLLR DLSKAPLPLQ AVQSAPVLDG GNGSVIAAPG GELENPGAMA NGHESST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00369 | DAP | Transfer from AT3G21175 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do018945.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966124.1 | 1e-176 | GATA transcription factor 20 isoform X2 | ||||
Swissprot | Q5Z4U5 | 1e-140 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | A0A1E5WJB7 | 0.0 | A0A1E5WJB7_9POAL; GATA transcription factor 20 | ||||
STRING | Si006750m | 1e-174 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.1 | 7e-63 | ZIM-like 1 |