PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018801.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 456aa    MW: 48396.3 Da    PI: 9.5011
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018801.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2761.1e-848845615374
        GRAS  15 gdlelaqalLarlsel....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege 109
                 +dl la a L +  +l    ++  gd + R+ a  + A aa   r  ++l +a ++ +++      +  a+ +f+++ P+l+f+hltaNqaIl+aveg+
  Do018801.1  88 RDLVLACADLLQRGDLpaarRAAGGDHFARALALRADAKAAAAGRVDPGLLSAASSAAAR----PASSGAYLAFNQIAPFLRFAHLTANQAILDAVEGA 182
                 445544444444333322222233355555555555555555555555555554444444....566678888************************** PP

        GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.............vakrledlele 192
                 +r+Hi+D+d+ +G+QWp+Llqa+a+R+   +gpp++RiTg g+    ++++l +tg+rL+ fA+++++pf+f++l              ++++++    
  Do018801.1 183 RRIHILDLDAAHGVQWPPLLQAIAERAdpaAGPPEVRITGAGA----DRDTLLRTGSRLRAFARSIQLPFHFTPLllscaathqqvasGSTTTASSAAT 277
                 **************************988888***********....9***************************999888777643222244445789 PP

        GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvEr 287
                 +L+++p+E+laVn+v+ lh+l       ++e  ++Lk vk + P v++++e+e+  ++     ++ +r + a+++ysa+f++lea++p+ s+er  vE+
  Do018801.1 278 SLELHPDETLAVNCVMFLHKLG-----GQDELAAFLKWVKAMAPAVMTIAERETVGGGYdridDLPQRAAVAMDHYSAVFEALEATVPPGSRERLAVEQ 371
                 9********************8.....2233577*******************65544334459*********************************** PP

        GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 e+lgrei+  +  +g +     + le+W ++ ++aGF + pls +a++qa+lllr ++ s+gy v+e +g+ +lgW++rpL+svS+W+
  Do018801.1 372 EVLGREIEASLGPAGGR---WWRGLERWGAAARAAGFAARPLSAFAVSQARLLLRLHYpSEGYLVQEARGACFLGWQTRPLLSVSSWQ 456
                 ************99987...7899***************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.0661435IPR005202Transcription factor GRAS
PfamPF035144.0E-8288456IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MHALRLLYPL MLLACHHRRL RPPPPPLLLR GLAPVKKLQL GTVGRAMLGS LHHHSSSSSD  60
TDNNNDNKNG GSNNSGLLAA ATAVPSARDL VLACADLLQR GDLPAARRAA GGDHFARALA  120
LRADAKAAAA GRVDPGLLSA ASSAAARPAS SGAYLAFNQI APFLRFAHLT ANQAILDAVE  180
GARRIHILDL DAAHGVQWPP LLQAIAERAD PAAGPPEVRI TGAGADRDTL LRTGSRLRAF  240
ARSIQLPFHF TPLLLSCAAT HQQVASGSTT TASSAATSLE LHPDETLAVN CVMFLHKLGG  300
QDELAAFLKW VKAMAPAVMT IAERETVGGG YDRIDDLPQR AAVAMDHYSA VFEALEATVP  360
PGSRERLAVE QEVLGREIEA SLGPAGGRWW RGLERWGAAA RAAGFAARPL SAFAVSQARL  420
LLRLHYPSEG YLVQEARGAC FLGWQTRPLL SVSSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4415445680375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018801.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP8765580.0KP876558.1 Saccharum hybrid cultivar ROC22 monoculm 1 (MOC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810768.10.0protein MONOCULM 1-like
RefseqXP_025810769.10.0protein MONOCULM 1-like
SwissprotQ84MM90.0MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A1E5VB640.0A0A1E5VB64_9POAL; Protein MONOCULM 1
STRINGSi008068m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.18e-70GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]