PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018705.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 629aa    MW: 65420.3 Da    PI: 8.0098
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018705.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30263322159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  Do018705.1 263 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 322
                 58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-32248322IPR003657WRKY domain
SuperFamilySSF1182902.22E-27256323IPR003657WRKY domain
PROSITE profilePS5081128.311258324IPR003657WRKY domain
SMARTSM007743.4E-37263323IPR003657WRKY domain
PfamPF031063.0E-27264322IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MIKGVKQLGS HEEQLTDEIK DDDHILAGNL FKSLHKSSSR KEACSPNPSE RSQMDEASNQ  60
ASTNSKDHNK VEEDRLASTR AEMGEVREEN KRLKTMLSRI VEDYRSLQLH FHDVLQQGQA  120
NKKLADPATG APTSIEEPEF VSLSLGTSTS MRKKEEKSSV SEGKGREHSM NIKGGLSLGL  180
SDCKVGATNN ARIQSDVLTL SPEGTSEESK DDATETAGQQ WPPSKTLKNL RSVGAEAEDD  240
IGPLPQAKKA RVSVRARCDA PTMNDGCQWR KYGQKIAKGN PCPRAYYRCT VAAGCPVRKQ  300
VQRCADDMSI LITTYEGTHN HPLSASATAM ASTTSAAASM LTSGSTTTSL RFPAASPAAA  360
AGLSFGFPPA AHHDASRHFF LPNGGTASIT STPSYPTITL DLTSPAATSQ AFSLNNRFSS  420
SSFGHGGARY PPTSFSFSNS GPSALSGAAW PAAGGAGYLS YGSPAASLFN GGKLSSFEAA  480
LSSINGRQQG GEVPALYHQQ QKASASGSAP PGVLTDTIAK AITSDPGFHT ALAAAITSYV  540
GTQGGKSSSA GGGEGGSQLQ GLKWGQHIGL APSPSSAGAA CSSALLARSP STTAAAEQGS  600
NGHRSFLQPS LGLSGSHSAS TSPVENVEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-202633251778Probable WRKY transcription factor 4
2lex_A2e-202633251778Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018705.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811456.10.0probable WRKY transcription factor 72
TrEMBLA0A1E5VBA10.0A0A1E5VBA1_9POAL; Putative WRKY transcription factor 72
STRINGPavir.Db02233.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-62WRKY DNA-binding protein 72