PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018643.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 297aa    MW: 32134.2 Da    PI: 9.3589
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018643.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     ++rWT eE+  l  +v+++G g+W+tI +          R+  ++k++w++
       Do018643.1  5 KQRWTSEEEAALRTGVAKHGVGNWRTILNDPElssilCSRSNVDLKDKWRN 55
                     79**********************************999***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.783161IPR017930Myb domain
SuperFamilySSF466895.46E-16259IPR009057Homeodomain-like
SMARTSM007175.8E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-13556IPR009057Homeodomain-like
PfamPF002491.6E-8556IPR001005SANT/Myb domain
CDDcd116609.36E-20657No hitNo description
Gene3DG3DSA:1.10.10.102.1E-18119192IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-17119194IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005267.4E-13120185IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.206122190IPR005818Linker histone H1/H5, domain H15
PfamPF005381.2E-10123183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGAPKQRWTS EEEAALRTGV AKHGVGNWRT ILNDPELSSI LCSRSNVDLK DKWRNMNVTV  60
TASSSRDKAR TAVKKTRAAP KNNDHSAAIS TVISDAHDEI VDAKPIASAS SEAWNTSNSK  120
KSHSRLDNII MEAIKNLNEP TGSHRTTIAS YIEEQYWPPS DFDHLLSAKL KDLATSGKLI  180
KVNRKYRIAP SSPRLEGRSP KMLLLEDVQK EPLKVGSDAN KSLTRSQVDA ELARMATMTP  240
EAAAAAAARA VVEAEAIMAE AEAAAREAEV AEAEAQAAQA FAEAALLTLK NRNAAKV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018643.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817366.11e-168single myb histone 5-like
RefseqXP_025817367.11e-168single myb histone 5-like
RefseqXP_025817368.11e-168single myb histone 5-like
SwissprotC0HIA31e-141SMH6_MAIZE; Single myb histone 6
TrEMBLA0A1E5WF290.0A0A1E5WF29_9POAL; Single myb histone 6 (Fragment)
STRINGSi002372m1e-165(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-61telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]