PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do018542.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GRAS

Protein Properties

Length: 731aa MW: 76393.6 Da PI: 5.86

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do018542.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	280.7	4.2e-86	372	730	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 e L ++A+a + g+ a+++Larl+++ p g+p+ R a+yf+eAL l++ + +++ ts+ +++ ++aa+k fs++sP+l+f+++ta q Do018542.1 372 LEELAAAAKAAEVGNSIGAREILARLNQQLPPIGKPFLRSASYFKEALLLALTD-----GHHGSTRLTSPLDVALKFAAYKSFSDLSPVLQFANFTATQ 465 57899***********************************************.....66667788888889********************** PP GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 a+l++++ +++ +iDfd++ G+QW+++lq+La R+ + p+l++T+++s++s++ el+ t+++L++fA+ lg+pfefn++ +l+++++ e Do018542.1 466 ALLDEMACTtaSCIRVIDFDLGVGGQWASFLQELAHRRgtgnVSLPMLKLTAFVSSASHHPLELRLTRDNLSQFAADLGIPFEFNAI---NLDAFDPAE 561 998665699********************97655569*************************************9...9**99 PP GRAS 194 Lrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 L + +E +aV+l + +l +L+lvk+l Pkvvv +++ +d+++ +F ++f+++l+ ++ l+dsl+a ++++e+++k+Er+l++ Do018542.1 562 LIAPTaDELVAVCLPVGCSART---PPLLM----LLELVKQLAPKVVVAIDHGSDRGDLPFSQHFMNCLQSCMFLLDSLDAA-GTDAEAASKIERFLIQ 652 966668****99666554...66666....9****************************************999.8999******** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++++v + ++ e+++ Wr+ +++aGF pvpls+ a++qa++ll++v+++g++ve+ l l+W++ +LvsvS+Wr Do018542.1 653 PRVEDAVLGRRRA-----EKAMAWRAVFTSAGFAPVPLSNLAEAQADCLLKRVQVRGFHVEKCGMGLALYWQRGELVSVSSWR 730 ***977665.....99************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.691	345	710	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-83	372	730	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence Send to blast
MRAAPFSAEG NWAGTIEALL WPEGKGGGGG RGGGGGGGDL LLVEPTSVLD CRRSPSPPYS 60 TSTLSSSLGA AAGDSSSSGV AAVSENSAAA AEATKWAAPG EHGGGGGGGG GGGRKEEWAG 120 GELPPIPGAL DVGFVGEEGW DAMLGDAAAA AGQEQTFLNW IMAAPGEMEP PAPLQQHHQL 180 LGNAAGFGFP ASDPLGFSLQ HHPGGGGGAS AGALASDLSS PGARSLTSSS GSSSKATSTF 240 GILPTEAPLQ QPPATTMPFH DGADIKPPLL GVPSASLLLN QHQPSPAASF FMPLPSFPDH 300 QHQPHLPPPP KRHHSMPDNL FLLQNQLQPP QQQGLPFPPL HTTAPFQLQP SLQPPRGAMK 360 TTAAAQQQQQ LLEELAAAAK AAEVGNSIGA REILARLNQQ LPPIGKPFLR SASYFKEALL 420 LALTDGHHGS TRLTSPLDVA LKFAAYKSFS DLSPVLQFAN FTATQALLDE MACTTASCIR 480 VIDFDLGVGG QWASFLQELA HRRGTGNVSL PMLKLTAFVS SASHHPLELR LTRDNLSQFA 540 ADLGIPFEFN AINLDAFDPA ELIAPTADEL VAVCLPVGCS ARTPPLLMLL ELVKQLAPKV 600 VVAIDHGSDR GDLPFSQHFM NCLQSCMFLL DSLDAAGTDA EAASKIERFL IQPRVEDAVL 660 GRRRAEKAMA WRAVFTSAGF APVPLSNLAE AQADCLLKRV QVRGFHVEKC GMGLALYWQR 720 GELVSVSSWR C

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence Send to blast

MRAAPFSAEG NWAGTIEALL WPEGKGGGGG RGGGGGGGDL LLVEPTSVLD CRRSPSPPYS  60
TSTLSSSLGA AAGDSSSSGV AAVSENSAAA AEATKWAAPG EHGGGGGGGG GGGRKEEWAG  120
GELPPIPGAL DVGFVGEEGW DAMLGDAAAA AGQEQTFLNW IMAAPGEMEP PAPLQQHHQL  180
LGNAAGFGFP ASDPLGFSLQ HHPGGGGGAS AGALASDLSS PGARSLTSSS GSSSKATSTF  240
GILPTEAPLQ QPPATTMPFH DGADIKPPLL GVPSASLLLN QHQPSPAASF FMPLPSFPDH  300
QHQPHLPPPP KRHHSMPDNL FLLQNQLQPP QQQGLPFPPL HTTAPFQLQP SLQPPRGAMK  360
TTAAAQQQQQ LLEELAAAAK AAEVGNSIGA REILARLNQQ LPPIGKPFLR SASYFKEALL  420
LALTDGHHGS TRLTSPLDVA LKFAAYKSFS DLSPVLQFAN FTATQALLDE MACTTASCIR  480
VIDFDLGVGG QWASFLQELA HRRGTGNVSL PMLKLTAFVS SASHHPLELR LTRDNLSQFA  540
ADLGIPFEFN AINLDAFDPA ELIAPTADEL VAVCLPVGCS ARTPPLLMLL ELVKQLAPKV  600
VVAIDHGSDR GDLPFSQHFM NCLQSCMFLL DSLDAAGTDA EAASKIERFL IQPRVEDAVL  660
GRRRAEKAMA WRAVFTSAGF APVPLSNLAE AQADCLLKRV QVRGFHVEKC GMGLALYWQR  720
GELVSVSSWR C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-25	371	730	4	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	36	GGRGGGGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do018542.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063450	0.0	BT063450.1 Zea mays full-length cDNA clone ZM_BFc0064F13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824521.1	0.0	scarecrow-like protein 6
TrEMBL	A0A1E5WGG8	0.0	A0A1E5WGG8_9POAL; Scarecrow-like protein 6
STRING	Pavir.Ga01057.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-89	GRAS family protein