PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do018346.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 472aa MW: 47340.2 Da PI: 6.6791

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do018346.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.2	1.4e-08	268	306	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Do018346.1 268 RRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 306 9***************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.5E-12	248	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.56	256	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-8	262	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-11	268	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-6	268	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.20E-6	272	309	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MQPTTREMQA MAGGDKISLD DLRAAGGGVH DDFLDQMLGG LPPSAWPELA SAVGAKAPEG 60 GAHAEGMQHQ QHQQFGGGLY DESALLASRL REHQISGCGG AESAEAAKQM VLQQLADLRH 120 GHHMLLQGMG RSTGGGGDGG LLLPLSLGSG GGSGGDVQAL LKAANSAGEV AGVFSGAFAG 180 SLQQQQQHFQ QHPQQQTAPL PGQGFGGGGG GGGGASGGAS QPQAGASGGG AAAPPRQRVR 240 ARRGQATDPH SIAERVSYAT TLLLLPLRRE RIAERMKALQ ELVPNANKTD KASMLDEIID 300 YVKFLQLQVL SMSRLGGAAA VAPLVADMSS EGRGGAPAAA GSDGLAVTEQ QVAKLMEEDM 360 GTAMQYLQGK GLCLMPVSLA SAISSATCHM RPPVGGPAGL GVAAAAHHMA AMRLPPGMNG 420 GGADAAAAVP ASPSMSVLTA QSAMANGAGG ADGEGSRSQQ QHPKDAASVS KP

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MQPTTREMQA MAGGDKISLD DLRAAGGGVH DDFLDQMLGG LPPSAWPELA SAVGAKAPEG  60
GAHAEGMQHQ QHQQFGGGLY DESALLASRL REHQISGCGG AESAEAAKQM VLQQLADLRH  120
GHHMLLQGMG RSTGGGGDGG LLLPLSLGSG GGSGGDVQAL LKAANSAGEV AGVFSGAFAG  180
SLQQQQQHFQ QHPQQQTAPL PGQGFGGGGG GGGGASGGAS QPQAGASGGG AAAPPRQRVR  240
ARRGQATDPH SIAERVSYAT TLLLLPLRRE RIAERMKALQ ELVPNANKTD KASMLDEIID  300
YVKFLQLQVL SMSRLGGAAA VAPLVADMSS EGRGGAPAAA GSDGLAVTEQ QVAKLMEEDM  360
GTAMQYLQGK GLCLMPVSLA SAISSATCHM RPPVGGPAGL GVAAAAHHMA AMRLPPGMNG  420
GGADAAAAVP ASPSMSVLTA QSAMANGAGG ADGEGSRSQQ QHPKDAASVS KP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do018346.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT062076	0.0	BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBank	KJ727938	0.0	KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799597.1	0.0	glycine, alanine and asparagine-rich protein-like
Swissprot	Q9ZUG9	4e-72	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A2T7ESB1	0.0	A0A2T7ESB1_9POAL; Uncharacterized protein
STRING	Pavir.Ba01914.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	7e-49	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]