PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018255.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 315aa    MW: 34792.9 Da    PI: 8.2307
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018255.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-111855643
                     HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding  6 teEdellvdavkqlGgg.tWktIartmgkgRtlkqcksr 43
                     +eEd+ l++ v+++G++ +W+t+a  ++ gR+++qc++r
       Do018255.1 18 EEEDDNLIQMVNLHGSKkNWSTVACGIP-GRSPNQCRDR 55
                     799*************************.********98 PP
2Myb_DNA-binding39.71.1e-1268110244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      ++W+++Ed  l++a+k +G+  W + a+ ++   Rt+k +k++w
       Do018255.1  68 QPWSEQEDIELIQAHKIHGSQ-WCKLAKLFPgRARTGKAIKNHW 110
                      79*******************.**********99********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.427761IPR017930Myb domain
SMARTSM007175.3E-61163IPR001005SANT/Myb domain
SuperFamilySSF466894.97E-1911110IPR009057Homeodomain-like
CDDcd001679.27E-111461No hitNo description
Gene3DG3DSA:1.10.10.602.9E-161566IPR009057Homeodomain-like
PfamPF139211.8E-111878No hitNo description
PROSITE profilePS5129417.42462118IPR017930Myb domain
SMARTSM007172.1E-1066116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1767119IPR009057Homeodomain-like
CDDcd001671.82E-1069110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
LPHKTGNPLK RKHTWSREEE DDNLIQMVNL HGSKKNWSTV ACGIPGRSPN QCRDRRWMFY  60
LDPAVNNQPW SEQEDIELIQ AHKIHGSQWC KLAKLFPGRA RTGKAIKNHW PSLMRKQMKS  120
GLVRELPGQF PCMPNDPLVT KNKGSSTINS GQDSSTNIPV SPDLPVTVRP KSEQGLPGNC  180
KNESTLKRKG DSTHGKGSAS HSVKVSEKVD GQIDRSNSAS SVDQKVSCAT ASFPGSLPKE  240
ESTNFLEVAP DRGFSPAYNH LSNNDRFKDI CSNADPESQE LHVSNIADLL DMSYCESLMI  300
VPPDSPNHGN STDGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-21181189105MYB PROTO-ONCOGENE PROTEIN
1h88_C9e-21411850159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-21411850159MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-21181189105C-Myb DNA-Binding Domain
1msf_C3e-21181189105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018255.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952183.11e-167transcription factor MYB3R-4
TrEMBLA0A1E5W6M70.0A0A1E5W6M7_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.J04773.1.p1e-151(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16796912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.12e-29myb domain protein 3r-4