PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do018203.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | C3H | ||||||||
Protein Properties | Length: 256aa MW: 27799.3 Da PI: 5.6459 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.2 | 2.4e-07 | 99 | 124 | 3 | 26 |
S---SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG...tCkyGdrCkFaHg 26 e+C++f+r C++G +C+FaHg Do018203.1 99 GEPCPDFRR-RpgaACPRGTTCPFAHG 124 689****99.558*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 95 | 128 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.08 | 96 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.882 | 96 | 126 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-5 | 100 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 131 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 25 | 134 | 157 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MLDPAALGGS VSWADPAAVE IPPQLLAALG EYHSAGRGGV GGDGDAAEAE AEADDEFMMY 60 EFKVRRCARA RSHDWTACPY AHPGEAARRR DPRRAAYTGE PCPDFRRRPG AACPRGTTCP 120 FAHGTFELWL HPSRYRTRPC RAGAACRRRV CFFAHAAAEL RAAPKDDGHG SPLSLSLSPK 180 STLASLWESP PVSPVEGRMR WLDAVDESPD AEVEELMLAM RELSFRKQAA MSSAPVLPPV 240 TEEDGPDLGW VSELVM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do018203.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067691 | 1e-162 | BT067691.1 Zea mays full-length cDNA clone ZM_BFc0130E04 mRNA, complete cds. | |||
GenBank | EU953602 | 1e-162 | EU953602.1 Zea mays clone 1437892 CCCH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021303637.1 | 1e-145 | zinc finger CCCH domain-containing protein 37-like | ||||
Swissprot | Q65X92 | 1e-129 | C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A1E5VLN0 | 0.0 | A0A1E5VLN0_9POAL; Zinc finger CCCH domain-containing protein 37 | ||||
STRING | Si022958m | 1e-133 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11209 | 19 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 2e-28 | C3H family protein |
Publications ? help Back to Top | |||
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