PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do018122.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | G2-like | ||||||||
Protein Properties | Length: 256aa MW: 27272.6 Da PI: 7.1253 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.5 | 8.6e-30 | 123 | 176 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv++v++L G+++A+Pk i++lm+v+gLt+e+v+SHLQkYRl Do018122.1 123 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKMIMQLMNVEGLTRENVASHLQKYRL 176 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.105 | 120 | 179 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-30 | 120 | 181 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.35E-19 | 121 | 180 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-23 | 124 | 176 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.1E-7 | 126 | 175 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGEEALDDYD LGCGGGDEER VMEWEMGLPG ADELTPLSQP LVPPGLAAAF RIPPEPGRTL 60 LDVHRASAAT VSRLRRAGSS SSSAVSSFPA WSGGAGGGGA AASARGMMDE ADSSVGGGSN 120 SKRPRLVWTP QLHKRFVDVV AHLGIKNAVP KMIMQLMNVE GLTRENVASH LQKYRLYVKR 180 MQGLSNEGPS PSDHIFASTP VPHSLVHEPQ QVPAPYYHHH VAAAPMGIIS GHGHQYHQNG 240 YGAYPQAAYH HGHADK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 3e-34 | 123 | 179 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00014 | PBM | Transfer from AT3G46640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do018122.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC165172 | 6e-84 | AC165172.2 Zea mays clone CH201-171E16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817497.1 | 1e-113 | transcription factor PCL1 | ||||
Swissprot | Q94DH3 | 1e-92 | PCL1_ORYSJ; Transcription factor PCL1 | ||||
TrEMBL | A0A1E5UJA8 | 0.0 | A0A1E5UJA8_9POAL; Transcription factor PCL1 | ||||
STRING | Si002653m | 1e-108 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46640.3 | 3e-62 | G2-like family protein |