PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do018050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 568aa MW: 61942.9 Da PI: 4.7411 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.4 | 1.3e-13 | 377 | 424 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + Er+RR+++N+ f L++l+P+ K++Ka+iL +++ Y+k+Lq Do018050.1 377 KNHVMSERKRREKLNEMFLALKSLVPSiH------KVDKASILAETIAYVKELQ 424 5899***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.4E-48 | 21 | 199 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.707 | 374 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-18 | 377 | 438 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.23E-16 | 377 | 428 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.9E-18 | 378 | 435 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.4E-11 | 378 | 424 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-17 | 380 | 429 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MAVALAASPV QEELLQPERQ LRSQLAAAAR TINWSYAIFW SISSTQPGIL TWTDGFYNGE 60 VKTRKIANSA ELTADQLVMQ RSEQLRELYE ALLSGECDRR AARPVASLSP EDLGDTEWYY 120 VVCMTYAFRP GQGLPGRSFA SNEHVWLCNA HLADSKAFPR ALLAKTIVCI PLISGVLELG 180 TTDPVVEDPD LVSQATASFW ELPFPACSEE PGSSPSANET GKASDIIVFE DLDHNAMETM 240 IAGAQELGEA ESLSNASLEH VTKEINEFYS LCEEIDVQPL EDSWIMDGSF EVPSSPQPAP 300 VAAAANDAAT ASTPVGRSRA TSFTAWTRSE SDSDEAAVPV IEEPQKLLKK VVAGGAWAGN 360 NGGGGTARTS QESGIIKNHV MSERKRREKL NEMFLALKSL VPSIHKVDKA SILAETIAYV 420 KELQRRVQEL ESSREPIISR PSGETTRLTR RHDDEVIKVS AGSKRKGSEL GGDVERQRPW 480 TLSKDGASNV TVTVSDKDVL LEVQCRWEEL LLTRVFDAIK SLHLDVLSVQ ASAPEGFMGL 540 KIQAQFASSA AVVPWMISEA LRKAIGKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-19 | 11 | 199 | 5 | 192 | Transcription factor MYC3 |
4rqw_B | 2e-19 | 11 | 199 | 5 | 192 | Transcription factor MYC3 |
4rs9_A | 2e-19 | 11 | 199 | 5 | 192 | Transcription factor MYC3 |
4yz6_A | 2e-19 | 11 | 199 | 5 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 382 | 387 | ERKRRE |
2 | 383 | 388 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do018050.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823475.1 | 0.0 | anthocyanin regulatory R-S protein-like isoform X2 | ||||
Swissprot | P13526 | 0.0 | ARLC_MAIZE; Anthocyanin regulatory Lc protein | ||||
TrEMBL | A0A1E5VA45 | 0.0 | A0A1E5VA45_9POAL; Anthocyanin regulatory Lc protein | ||||
STRING | Si000845m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP932 | 33 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 5e-79 | bHLH family protein |
Publications ? help Back to Top | |||
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