PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018034.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 467aa    MW: 50785.4 Da    PI: 7.8209
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018034.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84.1e-11202258155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Do018034.1 202 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDREEKAARAYDLAALKYWG 258
                 789******************333.44555535555.779999**************98 PP
2AP2361.7e-11290335755
         AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Do018034.1 290 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 335
                 8999********988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.10E-17202268No hitNo description
SuperFamilySSF541713.27E-14202268IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-12203267IPR001471AP2/ERF domain
PROSITE profilePS5103216.95203266IPR001471AP2/ERF domain
PfamPF008473.5E-8203258IPR001471AP2/ERF domain
SMARTSM003801.4E-21203272IPR001471AP2/ERF domain
PRINTSPR003677.2E-6204215IPR001471AP2/ERF domain
PROSITE profilePS5103216.291282343IPR001471AP2/ERF domain
PfamPF008471.6E-6290335IPR001471AP2/ERF domain
SMARTSM003809.4E-27290349IPR001471AP2/ERF domain
CDDcd000181.76E-20291345No hitNo description
Gene3DG3DSA:3.30.730.102.8E-15291343IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-15291345IPR016177DNA-binding domain
PRINTSPR003677.2E-6325345IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MPLQSSDAPL QYSSTPDWRH AAEAKGPKLE DFMSVTCSNK SSSSSLYDIC SHADQAKYHE  60
VHDLQPFSGG SYFHGHGSNG IGLGINMNAP PCSGFPDHHH HQFLPHHGEY FLGTPANPSA  120
PPGAMQSMPL YNNAAAGGGI IAGSMSISGI KSWLREAMYV PPERSAALSL SVTDVPAEPP  180
QLLPAPMPVA RKPAQTFGQR TSQFRGVTRH RWTGRYEAHL WDNTCRKEGQ TRKGRQGGYD  240
REEKAARAYD LAALKYWGPS THINFPLSHY EKELEEMKHM SRQEFIAHLR RHHQHGRWQA  300
RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDISKYDVK RICASTHLIG  360
NDAACRRSSP TRPPPDTTGG AERPSDAPGD HQGSGGASDN SDTSDGHRGA HLLHGLQYSQ  420
HPMKFEAGEG SSGGGSSWMT AAAAAARAVA PGVPSVHQLP VFALWNE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018034.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557671e-142BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796834.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1E5VLZ80.0A0A1E5VLZ8_9POAL; AP2-like ethylene-responsive transcription factor AIL1
STRINGSi035073m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.13e-97AP2 family protein