PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do018030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 26809.5 Da PI: 9.5115 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.1 | 1.6e-13 | 83 | 130 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++ErrRR+++ + f L +++P + +K++K++iL +++Y+k+L+ Do018030.1 83 QEHIAAERRRREKMQQQFVALATMVPDL-----TKMDKISILGSTIRYVKHLE 130 6799***********************9.....9*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.059 | 80 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-11 | 83 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-18 | 84 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.07E-16 | 84 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.09E-12 | 85 | 134 | No hit | No description |
SMART | SM00353 | 1.7E-13 | 86 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MQQWFQDPSM AQRFGSASAL PNVSFGGAVA VKIDQPSSSS ILSFGALPAA STLNFSGGDW 60 PYCATEGVPQ EPERRIRSHL STQEHIAAER RRREKMQQQF VALATMVPDL TKMDKISILG 120 STIRYVKHLE QKVKTLEKQS ARTTSSKSTV FEDKGHISSS NNQHASGPSG STYGVSGSIP 180 TVEASIHDNT VLLKISCERR SGVLVMIISK LESLSLFIIN TSVLPFSDSY FSINITAKAR 240 IPCPNC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 93 | ERRRRE |
2 | 89 | 94 | RRRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do018030.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828601.1 | 1e-117 | transcription factor bHLH18-like | ||||
TrEMBL | A0A1E5V8L3 | 0.0 | A0A1E5V8L3_9POAL; Transcription factor bHLH25 | ||||
STRING | Pavir.Hb01590.1.p | 1e-113 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6401 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 6e-31 | bHLH family protein |