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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Do017941.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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| Family | GeBP | ||||||||
| Protein Properties | Length: 306aa MW: 33159.7 Da PI: 10.5798 | ||||||||
| Description | GeBP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF573 | 37.1 | 8.8e-12 | 122 | 188 | 4 | 69 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkv 69
q+ ws+ De +lL + + f++++g p d+ ++++ + +sis ++ + + K++rLK Kf++
Do017941.1 122 QKHWSDADEFTLLAAAVAFRERNGRAPRLpDMAELFDSICDSISPHIDQFMVYYKMKRLKSKFQHSD 188
889**********************88877*********************************9865 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF04504 | 2.7E-10 | 122 | 187 | IPR007592 | Protein of unknown function DUF573 |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 306 aa Download sequence Send to blast |
MSSGRPSASA MDADAAPSPR SKKRPSRKSD SDWSPNPSPG GSPARMSEHK RRRRTSAESA 60 ALALTAVAAR ASAATSDAGR GAVRRSVRPR LRSARVDGGI GSIHMLGAAA ARVGGGRGGG 120 VQKHWSDADE FTLLAAAVAF RERNGRAPRL PDMAELFDSI CDSISPHIDQ FMVYYKMKRL 180 KSKFQHSDGP RDRRLRNLCS ILWGVGVIPS SEDDSDAAER HGVPDAAAMM PVVTEVLGEY 240 WKTNERVMAG VPLEKGLSLL GKKEGRLIET KWRKQLDEEM QSQIRQHDLA KEVCVLLTDA 300 IKGLGP |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Do017941.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004954046.2 | 1e-169 | uncharacterized protein LOC101785158 | ||||
| TrEMBL | A0A1E5WMZ5 | 0.0 | A0A1E5WMZ5_9POAL; Uncharacterized protein | ||||
| STRING | Si017925m | 1e-169 | (Setaria italica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP2682 | 27 | 63 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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