PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017782.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SBP
Protein Properties Length: 324aa    MW: 34479.4 Da    PI: 8.6748
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017782.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.52.9e-4178154278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 C v+gC++dls+++eyhrrh+vCe+hsk+pvv+v g+eqrfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+q+
  Do017782.1  78 CSVDGCRSDLSRCREYHRRHRVCEAHSKTPVVVVGGQEQRFCQQCSRFHMLSEFDEGKRSCRKRLDGHNRRRRKPQH 154
                 **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-3372139IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.47975152IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-3977157IPR004333Transcription factor, SBP-box
PfamPF031106.9E-3178151IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDWGAASGAP FWGAAAADPG PTMLSFAGPS SSSSSAAAAA EARLQDFAAD LAQRARPAGA  60
AGAGRRSRSA AGGGAESCSV DGCRSDLSRC REYHRRHRVC EAHSKTPVVV VGGQEQRFCQ  120
QCSRFHMLSE FDEGKRSCRK RLDGHNRRRR KPQHDLMNMG GFIPYHQVNQ FEVYPRTVPT  180
VGQNSDAMHL VDRQPTFSIS FSRTPKQFPF PQDGGSMLLT ARPSLLAEDR SHTGSSTCNN  240
ALSGTLGPEC ALSLLSSSLH HPSTAGIPIS GQTQVATSLS RMAASSQAAT TAVTTAFASG  300
GGHHVFVPDA MFEDPSQALP FSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2769151284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134151KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017782.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450775.11e-172putative squamosa promoter-binding-like protein 19 isoform X1
RefseqXP_021317606.11e-172putative squamosa promoter-binding-like protein 19 isoform X1
RefseqXP_021317607.11e-172putative squamosa promoter-binding-like protein 19 isoform X1
SwissprotQ2R3Y11e-100SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLA0A1E5VIE30.0A0A1E5VIE3_9POAL; Putative squamosa promoter-binding-like protein 19
STRINGSb05g017510.11e-171(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129612532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-40SBP family protein