PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017780.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-X1
Protein Properties Length: 778aa    MW: 84709.7 Da    PI: 8.0903
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017780.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.69.6e-07294311118
    zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                 CG H+C+  CHeG+CppC
  Do017780.1 294 CGLHRCKVNCHEGECPPC 311
                 ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060082.40E-591155No hitNo description
SMARTSM004380.023117135IPR000967Zinc finger, NF-X1-type
PfamPF014225.6119134IPR000967Zinc finger, NF-X1-type
CDDcd060087.92E-13162210No hitNo description
SMARTSM004380.0017172191IPR000967Zinc finger, NF-X1-type
PfamPF014220.031174190IPR000967Zinc finger, NF-X1-type
CDDcd060082.30E-9226268No hitNo description
PfamPF014220.0033236253IPR000967Zinc finger, NF-X1-type
SMARTSM004388.6E-4236255IPR000967Zinc finger, NF-X1-type
CDDcd060084.63E-15284332No hitNo description
PfamPF014222.3E-5294311IPR000967Zinc finger, NF-X1-type
SMARTSM004383.1E-4294313IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MICYDMVRRS APIWSCDSCF SIFHLPCIRK WVRSPASAAD ASPAADPSSP SWRCPGCQFV  60
YATPARDLAY TCFCGRRRDP PNDHFLTPHS CGEPCSKPLE RAEPPGAKGW EADATRCPHV  120
CVLQCHPGPC PPCKAFAPDR PCPCGKQIIV RRCADRSTPV TCGRPCERML PCKRHRCEKV  180
CHTGPCGDCT VAISARCFCG KKNEALLCGD MLVKGKLSEE DGVFSCSELC GHTLACGNHV  240
CKDMCHPGPC GKCELMPGKV TTCHCGKTGL QEIRASCLDP IPTCDKVCDK KLSCGLHRCK  300
VNCHEGECPP CLVRVEQKCR CGSSGRMVEC YQVKKEEFRC NKPCGRKKNC GRHRCSECCC  360
PLSKQFAQLE GLAILPLVIS HLQMGMLAQA LVAKLLVDSS DNMFEVSIIQ KLPMPLQPVE  420
SNGRRVPLGQ RKLSCDDECA KMEKKRVLAE AFDITPPNLD ALHFGENSSA SDLVSDLFRR  480
DPKWVVAIEE RCKFLVLGKV RGNSSSNLKL HVFCPMLKDK RDAIRLIADR WKLSVQSAGW  540
EPKRFITIHV TPKSKPPARI LGSKAGAPVT AAHPYFDPLV DMDPRLVVAM LDLPRDADVN  600
ALVLRFGGEC ELVWLNDKNA IAVFNDPARA ATALRRLDYG SVYQGAAMFM PSSAQASSGN  660
VWVGGQKDGG LAARSNPWKK PATAEPDLPS GDWTGVAGHA PAPGWRGANT AAQVMGTQNR  720
WNVLEADAAT SSGPGEDRKT APRTDAGYSA VQNSGNAGAS VSKLQPDVEV DDWEEACE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966863.20.0NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1E5V8G80.0A0A1E5V8G8_9POAL; NF-X1-type zinc finger protein NFXL1
STRINGSi005790m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.11e-159NF-X-like 1